{ "type": "genome", "identifier": "GCF_000689255.1", "organism": "Mycobacterium triplex", "title": "Mycobacterium triplex", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000689255.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3139001", "wgs_master": "CCAU000000000.1", "refseq_category": "na", "taxid": "47839", "species_taxid": "47839", "organism_name": "Mycobacterium triplex", "infraspecific_name": "strain=DSM 44626", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/04/28", "asm_name": "BN973_1", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_000689255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/689/255/GCF_000689255.1_BN973_1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6382840", "genome_size_ungapped": "6379625", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-07", "total_gene_count": "6042", "protein_coding_gene_count": "5852", "non_coding_gene_count": "55", "pubmed_id": "24874681" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-04-28", "dateModified": "2014-04-28", "datePublished": "2014-04-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium triplex" ], "sample_taxid": [ "47839" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.754 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6382840", "Number of Sequences": "4", "Longest Sequences (bp)": "5893857", "N50 (bp)": "5893857", "Gap Ratio (%)": "0.050369", "GCcontent (%)": "66.6", "Number of CDSs": "6036", "Average Protein Length": "324.5", "Coding Ratio (%)": "92.1", "Number of rRNAs": "3", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium triplex", "strain": "strain=DSM 44626", "accession": "GCA_000689255.1", "taxid": 47839, "species_taxid": 47839, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2125, "total_fragments": 2125, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycobacterium triplex", "strain": "strain=DSM 44626", "accession": "GCA_002102415.1", "taxid": 47839, "species_taxid": 47839, "relation_to_type": "type", "validated": true, "ani": 99.9795, "matched_fragments": 2093, "total_fragments": 2125, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycobacterium genavense", "strain": "strain=ATCC 51234", "accession": "GCA_000526915.1", "taxid": 36812, "species_taxid": 36812, "relation_to_type": "type", "validated": true, "ani": 93.8759, "matched_fragments": 1497, "total_fragments": 2125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium florentinum", "strain": "strain=JCM 14740", "accession": "GCA_010730355.1", "taxid": 292462, "species_taxid": 292462, "relation_to_type": "type", "validated": true, "ani": 89.5075, "matched_fragments": 1752, "total_fragments": 2125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium florentinum", "strain": "strain=DSM 44852", "accession": 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