{ "type": "genome", "identifier": "GCF_000691805.2", "organism": "Weissella oryzae SG25", "title": "Weissella oryzae SG25", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Agriculture and Food Research Organization, National Institute of Livestock and Grassland Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000691805.2", "bioproject": "PRJNA224116", "biosample": "SAMD00000341", "wgs_master": "BAWR00000000.1", "refseq_category": "reference genome", "taxid": "1329250", "species_taxid": "1129792", "organism_name": "Weissella oryzae SG25", "infraspecific_name": "strain=SG25", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/06/10", "asm_name": "ASM69180v2", "asm_submitter": "National Agriculture and Food Research Organization, National Institute of Livestock and Grassland Science", "gbrs_paired_asm": "GCA_000691805.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/805/GCF_000691805.2_ASM69180v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2129476", "genome_size_ungapped": "2129279", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "70", "contig_count": "72", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000691805.2-RS_2024_04_07", "annotation_date": "2024-04-07", "total_gene_count": "2258", "protein_coding_gene_count": "2148", "non_coding_gene_count": "84", "pubmed_id": "25013139" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-06-10", "dateModified": "2014-06-10", "datePublished": "2014-06-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Weissella oryzae SG25" ], "sample_taxid": [ "1329250" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Tochigi" ], "sample_host_location_id": [], "data_size": "0.602 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2129280", "Number of Sequences": "69", "Longest Sequences (bp)": "289629", "N50 (bp)": "148611", "Gap Ratio (%)": "0.009252", "GCcontent (%)": "38.9", "Number of CDSs": "2171", "Average Protein Length": "280.6", "Coding Ratio (%)": "85.8", "Number of rRNAs": "3", "Number of tRNAs": "71", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Weissella oryzae", "strain": "strain=SG25", "accession": "GCA_000691805.2", "taxid": 1129792, 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