{ "type": "genome", "identifier": "GCF_000695795.1", "organism": "Flavobacterium seoulense", "title": "Flavobacterium seoulense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "ChunLab, Inc", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000695795.1", "bioproject": "PRJNA224116", "biosample": "SAMN02797833", "wgs_master": "JNCA00000000.1", "refseq_category": "reference genome", "taxid": "1492738", "species_taxid": "1492738", "organism_name": "Flavobacterium seoulense", "infraspecific_name": "strain=EM1321", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/05/27", "asm_name": "ASM69579v1", "asm_submitter": "ChunLab, Inc", "gbrs_paired_asm": "GCA_000695795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/795/GCF_000695795.1_ASM69579v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3792640", "genome_size_ungapped": "3792640", "gc_percent": "33.000000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000695795.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3223", "protein_coding_gene_count": "3155", "non_coding_gene_count": "57", "pubmed_id": "25584140" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-05-27", "dateModified": "2014-05-27", "datePublished": "2014-05-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium seoulense" ], "sample_taxid": [ "1492738" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Bukhan Mountain" ], "sample_host_location_id": [], "data_size": "1.056 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3792640", "Number of Sequences": "56", "Longest Sequences (bp)": "480725", "N50 (bp)": "145572", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.2", "Number of CDSs": "3149", "Average Protein Length": "356.0", "Coding Ratio (%)": "88.7", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium seoulense", "strain": "strain=EM1321", "accession": "GCA_000695795.1", "taxid": 1492738, "species_taxid": 1492738, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1229, "total_fragments": 1235, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium commune", "strain": "strain=PK15", "accession": "GCA_001857965.1", "taxid": 1306519, "species_taxid": 1306519, "relation_to_type": "type", "validated": true, "ani": 84.3985, "matched_fragments": 871, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sufflavum", "strain": "strain=BBQ-12", "accession": "GCA_004016525.1", "taxid": 1921138, "species_taxid": 1921138, "relation_to_type": "type", "validated": true, "ani": 84.0039, "matched_fragments": 849, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium undicola", "strain": "strain=BBQ-18", "accession": "GCA_009909155.2", "taxid": 1932779, "species_taxid": 1932779, "relation_to_type": "type", "validated": true, "ani": 83.9011, "matched_fragments": 816, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium palustre", "strain": "strain=CGMCC 1.12811", "accession": "GCA_014639535.1", "taxid": 1476463, "species_taxid": 1476463, "relation_to_type": "type", "validated": true, "ani": 83.4074, "matched_fragments": 879, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flevense", "strain": "strain=NBRC 14960", "accession": "GCA_006539745.1", "taxid": 983, "species_taxid": 983, "relation_to_type": "type", "validated": true, "ani": 83.3949, "matched_fragments": 826, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flevense", "strain": "strain=DSM 1076", "accession": "GCA_900142775.1", "taxid": 983, "species_taxid": 983, "relation_to_type": "type", "validated": true, "ani": 83.3073, "matched_fragments": 863, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glycines", "strain": "strain=NBRC 105008", "accession": "GCA_001686935.1", "taxid": 551990, "species_taxid": 551990, "relation_to_type": "type", "validated": true, "ani": 82.9433, "matched_fragments": 803, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glycines", "strain": "strain=NBRC 105008", "accession": "GCA_007989005.1", "taxid": 551990, "species_taxid": 551990, "relation_to_type": "type", "validated": true, "ani": 82.9107, "matched_fragments": 806, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glycines", "strain": "strain=Gm-149", "accession": "GCA_900100165.1", "taxid": 551990, "species_taxid": 551990, "relation_to_type": "type", "validated": true, "ani": 82.8985, "matched_fragments": 794, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium daejeonense", "strain": "strain=DSM 17708", "accession": "GCA_000425425.1", "taxid": 350893, "species_taxid": 350893, "relation_to_type": "type", "validated": true, "ani": 81.827, "matched_fragments": 762, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 79.0758, "matched_fragments": 445, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 78.9029, "matched_fragments": 505, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=ATCC 51468", "accession": "GCA_002217315.1", "taxid": 37752, "species_taxid": 37752, "relation_to_type": "type", "validated": true, "ani": 78.8813, "matched_fragments": 500, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 78.8749, "matched_fragments": 461, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 78.8587, "matched_fragments": 460, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oreochromis", "strain": "strain=Costa Rica 04-02-TN", "accession": "GCA_019565455.1", "taxid": 2906078, "species_taxid": 2906078, "relation_to_type": "type", "validated": true, "ani": 77.0704, "matched_fragments": 155, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000695795.1", "gtdb_species": "s__Flavobacterium seoulense", "ani": 100.0, "matched_fragments": 1229, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_002280815.1", "gtdb_species": "s__Flavobacterium sp002280815", "ani": 84.4124, "matched_fragments": 657, "total_fragments": 1235, "gtdb_taxonomy": 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000425425.1", "gtdb_species": "s__Flavobacterium daejeonense", "ani": 81.8269, "matched_fragments": 762, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002454195.1", "gtdb_species": "s__Flavobacterium sp002454195", "ani": 81.6096, "matched_fragments": 447, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.326, "cell_length": 0.278, "doubling_h": 1.271, "growth_tmp": 24.705, "optimum_tmp": 25.047, "optimum_ph": 7.141, "genome_size": 3792640.0, "gc_content": 34.893, "coding_genes": 3154.048, "rRNA16S_genes": 5.145, "tRNA_genes": 58.611, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.347, "range_salinity": 0.333, "facultative_respiration": 0.049, "anaerobic_respiration": 0.019, "aerobic_respiration": 0.931, "mesophilic_range_tmp": 0.789, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.21, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "seoulense" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }