{ "type": "genome", "identifier": "GCF_000696575.1", "organism": "Siccibacter colletis", "title": "Siccibacter colletis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nottingham Trent University, UK", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000696575.1", "bioproject": "PRJNA224116", "biosample": "SAMN02769539", "wgs_master": "JMSQ00000000.1", "refseq_category": "na", "taxid": "1505757", "species_taxid": "1505757", "organism_name": "Siccibacter colletis", "infraspecific_name": "strain=1383", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/05/30", "asm_name": "C_colletis_1383", "asm_submitter": "Nottingham Trent University, UK", "gbrs_paired_asm": "GCA_000696575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/696/575/GCF_000696575.1_C_colletis_1383", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4255520", "genome_size_ungapped": "4255374", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-03", "total_gene_count": "4144", "protein_coding_gene_count": "3963", "non_coding_gene_count": "115", "pubmed_id": "24948763" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-05-30", "dateModified": "2014-05-30", "datePublished": "2014-05-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Siccibacter colletis" ], "sample_taxid": [ "1505757" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "1.201 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4255520", "Number of Sequences": "45", "Longest Sequences (bp)": "683534", "N50 (bp)": "290119", "Gap Ratio (%)": "0.003431", "GCcontent (%)": "57.1", "Number of CDSs": "4043", "Average Protein Length": "307.9", "Coding Ratio (%)": "87.8", "Number of rRNAs": "6", "Number of tRNAs": "79", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Siccibacter colletis", "strain": "strain=1383", "accession": "GCA_000696575.1", "taxid": 1505757, "species_taxid": 1505757, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1403, "total_fragments": 1403, 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