{ "type": "genome", "identifier": "GCF_000697965.2", "organism": "Ensifer adhaerens", "title": "Ensifer adhaerens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Arizona", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000697965.2", "bioproject": "PRJNA224116", "biosample": "SAMN02781308", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "106592", "species_taxid": "106592", "organism_name": "Ensifer adhaerens", "infraspecific_name": "strain=Casida A", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/06/16", "asm_name": "ASM69796v2", "asm_submitter": "University of Arizona", "gbrs_paired_asm": "GCA_000697965.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/697/965/GCF_000697965.2_ASM69796v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7267502", "genome_size_ungapped": "7267502", "gc_percent": "62.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-04", "total_gene_count": "6941", "protein_coding_gene_count": "6725", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-06-16", "dateModified": "2016-06-16", "datePublished": "2016-06-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Ensifer adhaerens" ], "sample_taxid": [ "106592" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Hagerstown, Pennsylvania" ], "sample_host_location_id": [], "data_size": "2.017 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 27.0, "max": 27.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7267502", "Number of Sequences": "3", "Longest Sequences (bp)": "4071185", "N50 (bp)": "4071185", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.3", "Number of CDSs": "6906", "Average Protein Length": "303.9", "Coding Ratio (%)": "86.6", "Number of rRNAs": "15", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ensifer sesbaniae", "strain": "strain=CCBAU 65729", "accession": "GCA_013283665.1", "taxid": 1214071, "species_taxid": 1214071, "relation_to_type": "type", "validated": true, "ani": 87.247, "matched_fragments": 1670, "total_fragments": 2421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium fredii", "strain": "strain=NBRC 14780", "accession": "GCA_006539605.1", "taxid": 380, "species_taxid": 380, "relation_to_type": "type", "validated": true, "ani": 81.9303, "matched_fragments": 1105, "total_fragments": 2421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium fredii", "strain": "strain=USDA 205", "accession": "GCA_001461695.1", "taxid": 380, "species_taxid": 380, "relation_to_type": "type", "validated": true, "ani": 81.902, "matched_fragments": 1116, "total_fragments": 2421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium fredii", "strain": "strain=USDA205", "accession": "GCA_009601405.1", "taxid": 380, "species_taxid": 380, "relation_to_type": "type", "validated": true, "ani": 81.8791, "matched_fragments": 1136, "total_fragments": 2421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"GCA_022899355.1", "taxid": 415996, "species_taxid": 415996, "relation_to_type": "type", "validated": true, "ani": 81.3178, "matched_fragments": 1060, "total_fragments": 2421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=ATCC 19623", "accession": "GCA_020883495.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 81.2309, "matched_fragments": 899, "total_fragments": 2421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=DSM 287", "accession": "GCA_009826855.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 81.1295, "matched_fragments": 874, "total_fragments": 2421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 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80.6104, "matched_fragments": 1005, "total_fragments": 2421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium subbaraonis", "strain": "strain=JC85", "accession": "GCA_900220975.1", "taxid": 908946, "species_taxid": 908946, "relation_to_type": "type", "validated": true, "ani": 80.4222, "matched_fragments": 826, "total_fragments": 2421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella daejeonensis", "strain": "strain=JCM 16236", "accession": "GCA_024281235.1", "taxid": 659017, "species_taxid": 659017, "relation_to_type": "type", "validated": true, "ani": 79.6888, "matched_fragments": 725, "total_fragments": 2421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter ferrooxidans", "strain": "strain=F8825", "accession": "GCA_004137355.1", "taxid": 2509717, "species_taxid": 2509717, "relation_to_type": "type", "validated": true, "ani": 79.5426, "matched_fragments": 674, "total_fragments": 2421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium rhizogenes", "strain": "strain=NBRC 13257", "accession": "GCA_000696095.1", "taxid": 359, "species_taxid": 359, "relation_to_type": "type", "validated": true, "ani": 79.4812, "matched_fragments": 775, "total_fragments": 2421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium rhizogenes", "strain": "strain=LMG150", "accession": "GCA_007002985.1", "taxid": 359, "species_taxid": 359, "relation_to_type": "type", "validated": true, "ani": 79.4646, "matched_fragments": 780, "total_fragments": 2421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium dioscoreae", "strain": "strain=S-93", "accession": "GCA_009176305.1", "taxid": 2653122, "species_taxid": 2653122, "relation_to_type": "type", "validated": true, "ani": 79.4461, "matched_fragments": 737, "total_fragments": 2421, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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