# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_2	LOCUS_00020	sequence1:2096..2584(+)	internal_stop_codon	2843..2845(+),2027..2029(+),2582..2584(+)		WP_002681375.1	HsdR family type I site-specific deoxyribonuclease	90.1	14.1	58.5
MGA_3	LOCUS_00030	sequence1:3149..3448(+)	internal_stop_codon	3506..3508(+),2882..2884(+),3446..3448(+)		WP_002681375.1	HsdR family type I site-specific deoxyribonuclease	100.0	9.6	63.0
MGA_4	LOCUS_00040	sequence1:3515..4567(+)	internal_stop_codon	3506..3508(+),4565..4567(+),3446..3448(+)		WP_002681375.1	HsdR family type I site-specific deoxyribonuclease	100.0	32.1	55.0
MGA_5	LOCUS_00050	sequence1:4577..5116(+)	internal_stop_codon	4565..4567(+)		WP_002681375.1	HsdR family type I site-specific deoxyribonuclease	98.3	16.3	47.2
MGA_6	LOCUS_00060	sequence1:5116..5271(+)	internal_stop_codon	5269..5271(+),5485..5487(+)		WP_002681373.1	SprT family zinc-dependent metalloprotease	94.1	20.7	43.8
MGA_7	LOCUS_00070	sequence1:5907..6206(-)	frameshift,internal_stop_codon	6237..6239(-)	6447	WP_166061917.1	restriction endonuclease subunit S	100.0	24.0	57.6
MGA_8	LOCUS_00080	sequence1:6237..6434(-)	frameshift,internal_stop_codon	6237..6239(-)	6447	WP_166061917.1	restriction endonuclease subunit S	96.9	15.3	47.6
MGA_9	LOCUS_00090	sequence1:6559..6891(+)	internal_stop_codon	7069..7071(+),6523..6525(+),6889..6891(+)		WP_012028462.1	site-specific integrase	100.0	35.7	66.4
MGA_10	LOCUS_00100	sequence1:6919..7071(+)	internal_stop_codon	7069..7071(+),6889..6891(+)		WP_007058548.1	site-specific integrase	100.0	16.2	74.0
MGA_11	LOCUS_00110	sequence1:7072..7401(+)	internal_stop_codon	7069..7071(+),6889..6891(+)		WP_007058548.1	site-specific integrase	99.1	34.3	65.7
MGA_17	LOCUS_00170	sequence1:15721..16185(-)	internal_stop_codon	15637..15639(-),15721..15723(-)		WP_080388512.1	hyperosmolarity resistance protein Ebh	91.6	1.6	28.8
MGA_85	LOCUS_00850	sequence1:73883..74089(-)	internal_stop_codon	74147..74149(-)		WP_010938955.1	elongation factor P	94.1	34.6	39.1
MGA_86	LOCUS_00860	sequence1:74147..74446(-)	internal_stop_codon	74147..74149(-)		WP_003699839.1	elongation factor P	100.0	53.5	49.5
MGA_90	LOCUS_00900	sequence1:76350..76568(-)	internal_stop_codon	76857..76859(-),76719..76721(-)		WP_011166468.1	DUF31 family protein	93.1	10.6	48.6
MGA_92	LOCUS_00920	sequence1:76857..77300(-)	internal_stop_codon	76857..76859(-),76719..76721(-),77394..77396(-)		WP_011166468.1	DUF31 family protein	100.0	21.5	37.5
MGA_93	LOCUS_00930	sequence1:77394..77606(-)	internal_stop_codon	77607..77609(-),77394..77396(-)		WP_011166468.1	DUF31 family protein	98.6	10.6	44.9
MGA_96	LOCUS_00960	sequence1:79755..81017(-)	internal_stop_codon	79566..79568(-),79755..79757(-)		WP_011166795.1	ATP F0F1 synthase subunit alpha	98.3	80.0	54.7
MGA_113	LOCUS_01130	sequence1:90442..90942(-)	partial			WP_205842899.1	DUF31 family protein	81.3	17.5	35.5
MGA_121	LOCUS_01210	sequence1:94855..95727(-)	internal_stop_codon	94855..94857(-),94828..94830(-),94600..94602(-),94588..94590(-)		WP_011183114.1	magnesium transporter	94.5	58.3	33.8
MGA_122	LOCUS_01220	sequence1:95738..96319(-)	partial			WP_011476186.1	diadenylate cyclase CdaA	73.6	52.5	46.6
MGA_124	LOCUS_01240	sequence1:96903..97511(-)	partial			WP_010888807.1	hemolysin family protein	87.6	39.5	31.7
MGA_127	LOCUS_01270	sequence1:98106..99047(-)	partial			WP_002288373.1	replicative DNA helicase	99.4	68.1	39.0
MGA_130	LOCUS_01300	sequence1:100005..100997(-)	internal_stop_codon	101172..101174(-)		WP_002899548.1	DHH family phosphoesterase	90.3	43.4	30.9
MGA_133	LOCUS_01330	sequence1:102179..102994(+)	partial			WP_001227709.1	glucose-specific PTS transporter subunit IIBC	93.7	36.1	29.7
MGA_140	LOCUS_01400	sequence1:109863..110072(-)	internal_stop_codon	110076..110078(-),109647..109649(-),109863..109865(-),109860..109862(-),109659..109661(-),110292..110294(-)		WP_002914455.1	endopeptidase	100.0	11.0	76.8
MGA_144	LOCUS_01440	sequence1:111770..112171(-)	internal_stop_codon	111770..111772(-),112211..112213(-),112418..112420(-)		WP_013447641.1	translation elongation factor 4	99.2	22.0	62.1
MGA_145	LOCUS_01450	sequence1:112211..112363(-)	internal_stop_codon	112211..112213(-),112418..112420(-)		WP_010706535.1	translation elongation factor 4	98.0	8.0	55.1
MGA_146	LOCUS_01460	sequence1:112418..113188(-)	internal_stop_codon	112211..112213(-),112418..112420(-)		WP_011183371.1	translation elongation factor 4	100.0	43.2	70.5
MGA_154	LOCUS_01540	sequence1:117549..117788(-)	internal_stop_codon	117837..117839(-),118035..118037(-),117792..117794(-),117858..117860(-)		WP_000762684.1	leucyl aminopeptidase	92.4	16.0	40.2
MGA_155	LOCUS_01550	sequence1:117858..118028(-)	internal_stop_codon	117837..117839(-),118035..118037(-),117792..117794(-),117858..117860(-)		WP_011015910.1	leucyl aminopeptidase	100.0	11.7	66.1
MGA_156	LOCUS_01560	sequence1:118035..118784(-)	internal_stop_codon	117837..117839(-),118035..118037(-),117792..117794(-),117858..117860(-)		WP_011166365.1	M17 family metallopeptidase	93.6	51.4	45.1
MGA_158	LOCUS_01580	sequence1:119422..120330(-)	internal_stop_codon	119200..119202(-),119422..119424(-),119245..119247(-)		WP_011182967.1	M17 family metallopeptidase	98.7	65.6	35.4
MGA_159	LOCUS_01590	sequence1:120323..120703(-)	partial			WP_011015911.1	IMPACT family protein	85.7	54.9	52.8
MGA_169	LOCUS_01690	sequence1:127249..127722(-)	internal_stop_codon	127249..127251(-),127981..127983(-),127837..127839(-)		WP_002681381.1	type I restriction-modification system subunit M	100.0	17.9	28.3
MGA_171	LOCUS_01710	sequence1:128290..128751(-)	internal_stop_codon	128881..128883(-),128803..128805(-),128134..128136(-),128290..128292(-)		WP_002681381.1	type I restriction-modification system subunit M	100.0	17.2	60.8
MGA_172	LOCUS_01720	sequence1:128881..129654(-)	internal_stop_codon	128881..128883(-),128803..128805(-),129682..129684(-)		WP_002681381.1	type I restriction-modification system subunit M	100.0	29.0	65.4
MGA_173	LOCUS_01730	sequence1:129821..130159(-)	internal_stop_codon	130265..130267(-)		WP_000137560.1	oligoendopeptidase F	85.7	16.0	37.5
MGA_174	LOCUS_01740	sequence1:130265..130603(-)	internal_stop_codon	130265..130267(-),130613..130615(-)		WP_002387169.1	oligoendopeptidase F	97.3	17.7	51.4
MGA_177	LOCUS_01770	sequence1:131669..132301(-)	internal_stop_codon	132371..132373(-)		WP_003426617.1	ABC transporter ATP-binding protein	99.5	35.1	53.1
MGA_179	LOCUS_01790	sequence1:132701..132979(-)	internal_stop_codon	133010..133012(-),132701..132703(-),132542..132544(-)		WP_011836926.1	ABC transporter ATP-binding protein	89.1	13.9	34.1
MGA_180	LOCUS_01800	sequence1:133010..133531(-)	internal_stop_codon	133010..133012(-)		WP_003732630.1	ABC transporter ATP-binding protein	89.0	24.5	26.0
MGA_181	LOCUS_01810	sequence1:133911..134573(-)	internal_stop_codon	133911..133913(-),134610..134612(-),134814..134816(-),134586..134588(-),133728..133730(-)		WP_000834766.1	ABC transporter ATP-binding protein	84.1	30.8	35.1
MGA_184	LOCUS_01840	sequence1:135693..135899(+)	internal_stop_codon	135897..135899(+)		WP_011183409.1	ABC transporter ATP-binding protein	76.5	14.9	63.5
MGA_185	LOCUS_01850	sequence1:135945..136112(+)	internal_stop_codon	135897..135899(+)		WP_000433551.1	ABC transporter ATP-binding protein	96.4	14.6	58.5
MGA_186	LOCUS_01860	sequence1:136317..136691(+)	internal_stop_codon	136689..136691(+)		WP_001831686.1	ABC transporter ATP-binding protein	99.2	33.8	60.2
MGA_189	LOCUS_01890	sequence1:137524..137910(+)	internal_stop_codon	137482..137484(+)		WP_013097090.1	spermidine/putrescine ABC transporter permease PotB	84.4	37.5	34.9
MGA_197	LOCUS_01970	sequence1:141260..141796(-)	internal_stop_codon	141260..141262(-)		WP_011166634.1	methionyl-tRNA formyltransferase	96.1	54.6	50.9
MGA_203	LOCUS_02030	sequence1:144253..145128(-)	partial			WP_011166854.1	DNA polymerase I	99.0	31.9	36.3
MGA_205	LOCUS_02050	sequence1:145829..146239(-)	internal_stop_codon	146300..146302(-),145829..145831(-)		WP_011017116.1	DNA polymerase III subunit alpha	95.6	11.5	43.8
MGA_206	LOCUS_02060	sequence1:146300..147586(-)	internal_stop_codon	146300..146302(-)		WP_011183481.1	DNA polymerase III subunit alpha	95.8	41.3	41.5
MGA_210	LOCUS_02100	sequence1:149740..150309(-)	internal_stop_codon	150352..150354(-)		WP_002457083.1	DNA helicase PcrA	97.4	26.2	35.3
MGA_211	LOCUS_02110	sequence1:150352..150771(-)	internal_stop_codon	150913..150915(-),150352..150354(-)		WP_010944022.1	UvrD-helicase domain-containing protein	43.9	8.4	50.0
MGA_212	LOCUS_02120	sequence1:150913..151116(-)	internal_stop_codon	151141..151143(-),150913..150915(-)		WP_003546275.1	DNA helicase PcrA	98.5	9.1	44.1
MGA_213	LOCUS_02130	sequence1:151141..151599(-)	internal_stop_codon	151141..151143(-),150913..150915(-),151624..151626(-)		WP_003132060.1	DNA helicase PcrA	99.3	20.2	37.9
MGA_214	LOCUS_02140	sequence1:151624..151914(-)	internal_stop_codon	151624..151626(-)		WP_009888186.1	DUF3553 domain-containing protein	90.6	11.7	61.4
MGA_219	LOCUS_02190	sequence1:153922..154467(-)	internal_stop_codon	154588..154590(-),153922..153924(-)		WP_001557331.1	type I DNA topoisomerase	100.0	27.2	34.0
MGA_220	LOCUS_02200	sequence1:154879..155121(-)	internal_stop_codon	154879..154881(-)		WP_002262866.1	type I DNA topoisomerase	97.5	10.9	45.0
MGA_221	LOCUS_02210	sequence1:155707..156111(+)	internal_stop_codon	156109..156111(+)		WP_011166843.1	ribonuclease J	93.3	20.5	46.4
MGA_222	LOCUS_02220	sequence1:156175..156816(+)	internal_stop_codon	156109..156111(+),156814..156816(+)		WP_000670379.1	ribonuclease J1	97.7	37.3	48.1
MGA_223	LOCUS_02230	sequence1:156883..157269(+)	internal_stop_codon	157267..157269(+),156814..156816(+)		WP_003231875.1	ribonuclease J2	93.0	21.3	31.9
MGA_229	LOCUS_02290	sequence1:161346..161618(+)	internal_stop_codon	161616..161618(+)		WP_000729603.1	PTS fructose transporter subunit IIA	85.6	52.0	39.0
MGA_231	LOCUS_02310	sequence1:162619..163137(-)	internal_stop_codon	163195..163197(-),163198..163200(-)		WP_017869017.1	RNA polymerase sigma factor RpoD	98.8	25.8	41.8
MGA_232	LOCUS_02320	sequence1:163198..163404(-)	internal_stop_codon	163195..163197(-),163198..163200(-)		WP_002656292.1	RNA polymerase sigma factor RpoD	97.1	10.5	60.6
MGA_235	LOCUS_02350	sequence1:166088..166546(-)	internal_stop_codon	166748..166750(-),166598..166600(-)		WP_010966472.1	glycine--tRNA ligase	100.0	32.9	58.2
MGA_236	LOCUS_02360	sequence1:166598..166729(-)	internal_stop_codon	166748..166750(-),166598..166600(-)		WP_000287157.1	glycine--tRNA ligase	90.7	8.5	66.7
MGA_237	LOCUS_02370	sequence1:166748..167002(-)	internal_stop_codon	166748..166750(-),167027..167029(-),167219..167221(-),166598..166600(-)		WP_011166648.1	glycine--tRNA ligase	100.0	18.6	78.8
MGA_243	LOCUS_02430	sequence1:171282..171554(-)	internal_stop_codon	171282..171284(-),171765..171767(-)		WP_005458327.1	endonuclease	60.0	10.8	46.6
MGA_246	LOCUS_02460	sequence1:172863..173408(+)	internal_stop_codon	173406..173408(+)		WP_011022624.1	LemA family protein	81.8	81.9	34.2
MGA_255	LOCUS_02550	sequence1:179993..180151(+)	internal_stop_codon	180149..180151(+),180431..180433(+),180383..180385(+)		WP_010874884.1	inorganic diphosphatase	98.1	27.7	64.7
MGA_274	LOCUS_02740	sequence1:195805..196020(-)	partial			WP_003546391.1	Cof-type HAD-IIB family hydrolase	74.6	19.5	50.9
MGA_285	LOCUS_02850	sequence1:202045..202461(+)	frameshift,internal_stop_codon	202729..202731(+),202459..202461(+)	202605	WP_209611440.1	DNA cytosine methyltransferase	97.8	42.3	57.8
MGA_286	LOCUS_02860	sequence1:202465..202650(+)	internal_stop_codon	202459..202461(+)		WP_011964364.1	DNA (cytosine-5-)-methyltransferase	100.0	13.2	41.0
MGA_298	LOCUS_02980	sequence1:211004..211444(-)	internal_stop_codon	211004..211006(-)		WP_005808614.1	NAD(+) synthase	97.9	59.2	40.4
MGA_299	LOCUS_02990	sequence1:211693..213057(-)	internal_stop_codon	213244..213246(-)		WP_020862721.1	endopeptidase La	94.1	53.9	56.0
MGA_300	LOCUS_03000	sequence1:213244..213681(-)	internal_stop_codon	213244..213246(-)		WP_002658127.1	endopeptidase La	92.4	16.1	27.9
MGA_303	LOCUS_03030	sequence1:215111..215251(-)	internal_stop_codon	215063..215065(-),215111..215113(-),215390..215392(-),214892..214894(-),215465..215467(-)		WP_002852890.1	leucine--tRNA ligase	100.0	5.7	87.0
MGA_305	LOCUS_03050	sequence1:216617..216787(-)	internal_stop_codon	216617..216619(-),216491..216493(-),216800..216802(-),216323..216325(-),216812..216814(-),216554..216556(-),216422..216424(-),216449..216451(-)		WP_002852890.1	leucine--tRNA ligase	98.2	6.8	76.4
MGA_313	LOCUS_03130	sequence1:219728..220018(-)	internal_stop_codon	220220..220222(-)		WP_010905298.1	DNA-formamidopyrimidine glycosylase	91.7	30.1	43.2
MGA_315	LOCUS_03150	sequence1:220671..221474(+)	partial			WP_012583038.1	ABC transporter ATP-binding protein	44.9	37.5	40.8
MGA_316	LOCUS_03160	sequence1:221817..222053(+)	partial			WP_010883321.1	ABC transporter ATP-binding protein	51.3	12.3	55.0
MGA_322	LOCUS_03220	sequence1:225498..226220(-)	internal_stop_codon	225498..225500(-),225429..225431(-)		WP_011183071.1	6-phosphofructokinase	100.0	74.0	51.2
MGA_323	LOCUS_03230	sequence1:226236..226787(-)	internal_stop_codon	226809..226811(-)		WP_003131344.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	97.8	62.7	40.9
MGA_324	LOCUS_03240	sequence1:226809..227063(-)	internal_stop_codon	226809..226811(-)		WP_002864845.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	98.8	29.8	40.9
MGA_325	LOCUS_03250	sequence1:227051..227638(-)	internal_stop_codon	227921..227923(-),227765..227767(-),227852..227854(-),227648..227650(-),227831..227833(-)		WP_011183252.1	valine--tRNA ligase	96.4	23.8	26.4
MGA_326	LOCUS_03260	sequence1:227921..228085(-)	internal_stop_codon	227921..227923(-),227765..227767(-),228341..228343(-),227852..227854(-),228212..228214(-),228362..228364(-),228296..228298(-),228242..228244(-),228173..228175(-),228320..228322(-),228317..228319(-),227648..227650(-),227831..227833(-)		WP_004398606.1	valine--tRNA ligase	100.0	6.1	70.4
MGA_327	LOCUS_03270	sequence1:228362..229003(-)	internal_stop_codon	228341..228343(-),228212..228214(-),228362..228364(-),228296..228298(-),228242..228244(-),229151..229153(-),228173..228175(-),229187..229189(-),229013..229015(-),228320..228322(-),228317..228319(-),229193..229195(-)		WP_011166500.1	valine--tRNA ligase	98.6	24.2	40.8
MGA_333	LOCUS_03330	sequence1:234349..234720(-)	internal_stop_codon	234793..234795(-)		WP_011166769.1	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	99.2	42.5	49.6
MGA_334	LOCUS_03340	sequence1:234793..235248(-)	internal_stop_codon	234793..234795(-)		WP_002355891.1	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	96.7	46.9	55.7
MGA_335	LOCUS_03350	sequence1:235337..235678(-)	internal_stop_codon	235337..235339(-)		WP_003723756.1	division/cell wall cluster transcriptional repressor MraZ	98.2	77.6	36.9
MGA_336	LOCUS_03360	sequence1:236080..236631(-)	internal_stop_codon	236794..236796(-),236080..236082(-),235957..235959(-)		WP_011949165.1	dihydrolipoyl dehydrogenase	98.9	39.7	39.6
MGA_337	LOCUS_03370	sequence1:236794..237054(-)	internal_stop_codon	236794..236796(-),237061..237063(-),237202..237204(-)		WP_011166465.1	dihydrolipoyl dehydrogenase	90.7	12.9	46.2
MGA_338	LOCUS_03380	sequence1:237202..237735(-)	internal_stop_codon	237061..237063(-),237202..237204(-)		WP_011182939.1	dihydrolipoyl dehydrogenase	100.0	28.1	50.6
MGA_339	LOCUS_03390	sequence1:237953..238114(-)	internal_stop_codon	237818..237820(-),238370..238372(-),237953..237955(-),238316..238318(-)		WP_010972452.1	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	100.0	12.9	54.7
MGA_341	LOCUS_03410	sequence1:238370..238663(-)	internal_stop_codon	238370..238372(-),238316..238318(-)		WP_000863427.1	pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase	93.8	21.7	34.0
MGA_347	LOCUS_03470	sequence1:241342..241593(-)	internal_stop_codon	241696..241698(-)		WP_012545050.1	SsrA-binding protein SmpB	85.5	47.0	56.3
MGA_348	LOCUS_03480	sequence1:242074..242688(-)	internal_stop_codon	242794..242796(-),242074..242076(-)		WP_011183317.1	AAA family ATPase	99.5	28.8	57.6
MGA_349	LOCUS_03490	sequence1:243031..243906(-)	internal_stop_codon	243955..243957(-),243031..243033(-),243988..243990(-),242794..242796(-)		WP_001829334.1	ATP-dependent chaperone ClpB	98.3	32.9	61.1
MGA_355	LOCUS_03550	sequence1:246576..246914(-)	internal_stop_codon	246576..246578(-)		WP_010879950.1	nicotinate (nicotinamide) nucleotide adenylyltransferase	100.0	66.7	51.8
MGA_358	LOCUS_03580	sequence1:247492..248181(-)	partial			WP_003704482.1	DNA polymerase IV	95.6	62.7	28.9
MGA_360	LOCUS_03600	sequence1:248580..248945(-)	internal_stop_codon	249006..249008(-)		WP_003019266.1	SufS family cysteine desulfurase	90.9	27.5	33.0
MGA_361	LOCUS_03610	sequence1:249006..249317(-)	internal_stop_codon	249375..249377(-),249006..249008(-)		WP_129622721.1	aminotransferase class V-fold PLP-dependent enzyme	99.0	26.4	46.1
MGA_362	LOCUS_03620	sequence1:249375..249725(-)	internal_stop_codon	249375..249377(-)		WP_129622721.1	aminotransferase class V-fold PLP-dependent enzyme	97.4	29.5	44.7
MGA_377	LOCUS_03770	sequence1:259409..260065(-)	internal_stop_codon	260087..260089(-),260156..260158(-)		WP_043943600.1	ABC transporter ATP-binding protein	100.0	34.8	58.3
MGA_380	LOCUS_03800	sequence1:260771..260959(-)	internal_stop_codon	260996..260998(-),260762..260764(-),260771..260773(-)		WP_011459544.1	ABC transporter ATP-binding protein	100.0	9.5	45.2
MGA_381	LOCUS_03810	sequence1:261333..262190(-)	internal_stop_codon	262221..262223(-)		WP_010966684.1	ABC transporter ATP-binding protein	100.0	49.2	46.0
MGA_382	LOCUS_03820	sequence1:262221..262511(-)	internal_stop_codon	262221..262223(-),262539..262541(-)		WP_012775079.1	ABC transporter ATP-binding protein	96.9	16.1	30.1
MGA_383	LOCUS_03830	sequence1:262539..263069(-)	internal_stop_codon	262539..262541(-)		WP_012583011.1	ABC transporter ATP-binding protein	97.7	28.2	34.3
MGA_385	LOCUS_03850	sequence1:264100..264384(-)	internal_stop_codon	264673..264675(-),264616..264618(-)		WP_001288399.1	phosphoketolase family protein	98.9	11.7	57.0
MGA_386	LOCUS_03860	sequence1:264940..265131(-)	internal_stop_codon	264913..264915(-),264940..264942(-),265132..265134(-),265309..265311(-),264673..264675(-)		WP_001288399.1	phosphoketolase family protein	90.5	7.2	91.2
MGA_387	LOCUS_03870	sequence1:265132..265260(-)	internal_stop_codon	264913..264915(-),264940..264942(-),265132..265134(-),265309..265311(-),265462..265464(-)		WP_002294145.1	phosphoketolase family protein	100.0	5.3	69.0
MGA_388	LOCUS_03880	sequence1:265903..266244(-)	internal_stop_codon	266290..266292(-),266398..266400(-),266401..266403(-),265903..265905(-),265759..265761(-)		WP_011476383.1	phosphoketolase family protein	99.1	14.2	82.1
MGA_391	LOCUS_03910	sequence1:267466..267681(-)	internal_stop_codon	267466..267468(-)		WP_011183562.1	ABC transporter permease	64.8	15.4	52.2
MGA_393	LOCUS_03930	sequence1:268101..268703(-)	internal_stop_codon	268731..268733(-),268755..268757(-)		WP_011166220.1	ABC transporter permease	84.0	19.3	30.2
MGA_394	LOCUS_03940	sequence1:268755..269036(-)	internal_stop_codon	268731..268733(-),268755..268757(-)		WP_002679664.1	ABC transporter permease	96.8	23.3	44.7
MGA_395	LOCUS_03950	sequence1:269293..269574(-)	internal_stop_codon	269737..269739(-)		WP_011166221.1	ABC transporter ATP-binding protein	83.9	14.5	59.0
MGA_397	LOCUS_03970	sequence1:269935..271551(-)	internal_stop_codon	269737..269739(-)		WP_011183564.1	ABC transporter ATP-binding protein	62.6	66.7	47.8
MGA_401	LOCUS_04010	sequence1:273237..273533(-)	internal_stop_codon	273606..273608(-)		WP_026199036.1	serine hydroxymethyltransferase	99.0	23.0	54.6
MGA_402	LOCUS_04020	sequence1:273606..274355(-)	internal_stop_codon	273606..273608(-)		WP_010946462.1	serine hydroxymethyltransferase	98.0	59.0	58.5
MGA_407	LOCUS_04070	sequence1:276885..277208(-)	internal_stop_codon	276885..276887(-),276804..276806(-)		WP_010874592.1	uracil-DNA glycosylase	83.2	36.2	41.6
MGA_408	LOCUS_04080	sequence1:277198..277368(-)	internal_stop_codon	277510..277512(-),277390..277392(-)		WP_004398818.1	phenylalanine--tRNA ligase subunit alpha	94.6	15.7	61.1
MGA_409	LOCUS_04090	sequence1:277510..277728(-)	internal_stop_codon	277831..277833(-),277510..277512(-),277390..277392(-)		WP_011183298.1	phenylalanine--tRNA ligase subunit alpha	98.6	22.0	46.8
MGA_411	LOCUS_04110	sequence1:278284..278493(-)	internal_stop_codon	278191..278193(-),278512..278514(-),278284..278286(-)		WP_011166639.1	replication-associated recombination protein A	98.6	16.5	51.5
MGA_412	LOCUS_04120	sequence1:278512..279372(-)	internal_stop_codon	278512..278514(-),278284..278286(-)		WP_011166639.1	replication-associated recombination protein A	98.6	70.8	44.3
MGA_415	LOCUS_04150	sequence1:281014..281394(-)	frameshift,internal_stop_codon	280782..280784(-),281014..281016(-)	281001,280961	WP_000638280.1	cardiolipin synthase	100.0	25.2	27.6
MGA_419	LOCUS_04190	sequence1:282594..283100(+)	partial			WP_000934799.1	single-stranded DNA-binding protein	63.7	65.9	36.4
MGA_425	LOCUS_04250	sequence1:285199..285399(-)	internal_stop_codon	285199..285201(-),285463..285465(-)		WP_011167158.1	aspartate--ammonia ligase	98.5	19.9	69.2
MGA_426	LOCUS_04260	sequence1:285463..285768(-)	internal_stop_codon	285772..285774(-),285898..285900(-),285778..285780(-),285463..285465(-)		WP_011167158.1	aspartate--ammonia ligase	100.0	31.0	53.5
MGA_427	LOCUS_04270	sequence1:285898..286128(-)	internal_stop_codon	285772..285774(-),285898..285900(-),285778..285780(-)		WP_011167158.1	aspartate--ammonia ligase	100.0	23.3	69.7
MGA_428	LOCUS_04280	sequence1:286482..286694(+)	partial			WP_011166919.1	LacI family DNA-binding transcriptional regulator	98.6	61.1	42.0
MGA_434	LOCUS_04340	sequence1:290186..290434(-)	internal_stop_codon	290462..290464(-)		WP_010880568.1	arginine--tRNA ligase	97.6	14.1	37.8
MGA_435	LOCUS_04350	sequence1:290462..290788(-)	internal_stop_codon	290819..290821(-),290462..290464(-)		WP_012583838.1	arginine--tRNA ligase	92.6	18.2	47.0
MGA_436	LOCUS_04360	sequence1:290819..291868(-)	internal_stop_codon	290819..290821(-)		WP_003227570.1	arginine--tRNA ligase	85.1	52.9	43.5
MGA_438	LOCUS_04380	sequence1:292683..293015(-)	frameshift,internal_stop_codon	293136..293138(-),292545..292547(-),292683..292685(-),292659..292661(-),293097..293099(-),293127..293129(-)	292493	WP_010874664.1	APC family permease	64.5	12.2	59.2
MGA_439	LOCUS_04390	sequence1:294402..295007(-)	frameshift,internal_stop_codon	294132..294134(-),294402..294404(-)	294266	WP_000194841.1	arginine deiminase	90.0	46.3	39.4
MGA_444	LOCUS_04440	sequence1:298923..299654(+)	partial			WP_011166932.1	NAD-dependent DNA ligase LigA	96.3	35.2	39.8
MGA_446	LOCUS_04460	sequence1:300132..301109(+)	internal_stop_codon	300030..300032(+)		WP_011183057.1	NAD-dependent DNA ligase LigA	100.0	50.0	43.2
MGA_451	LOCUS_04510	sequence1:304119..304265(-)	internal_stop_codon	304119..304121(-),304032..304034(-),304281..304283(-)		WP_011167116.1	ABC transporter ATP-binding protein	100.0	10.0	70.8
MGA_452	LOCUS_04520	sequence1:304281..304742(-)	internal_stop_codon	304794..304796(-),304119..304121(-),304032..304034(-),304281..304283(-)		WP_011167116.1	ABC transporter ATP-binding protein	100.0	31.8	73.9
MGA_453	LOCUS_04530	sequence1:304794..305183(-)	internal_stop_codon	304794..304796(-)		WP_011167116.1	ABC transporter ATP-binding protein	65.9	17.7	64.7
MGA_454	LOCUS_04540	sequence1:306522..306779(-)	internal_stop_codon	306822..306824(-),306522..306524(-),306909..306911(-)		WP_011167114.1	ABC transporter permease	96.5	23.0	72.0
MGA_459	LOCUS_04590	sequence1:308544..309032(-)	internal_stop_codon	309078..309080(-),309279..309281(-),308544..308546(-),309105..309107(-)		WP_011167113.1	ABC transporter substrate-binding protein	96.3	15.5	45.5
MGA_461	LOCUS_04610	sequence1:309279..310094(-)	internal_stop_codon	309078..309080(-),309279..309281(-),309105..309107(-)		WP_011167113.1	ABC transporter substrate-binding protein	70.5	18.6	36.5
MGA_472	LOCUS_04720	sequence1:314672..315697(-)	internal_stop_codon	314651..314653(-),314672..314674(-)		WP_011167112.1	PDxFFG protein	97.4	17.8	31.4
MGA_478	LOCUS_04780	sequence1:321494..321637(-)	internal_stop_codon	321686..321688(-)		WP_010906339.1	translation elongation factor Ts	93.6	12.9	59.1
MGA_480	LOCUS_04800	sequence1:322411..322842(-)	internal_stop_codon	322876..322878(-),323101..323103(-)		WP_003220918.1	30S ribosomal protein S2	82.5	48.8	41.7
MGA_481	LOCUS_04810	sequence1:322876..323091(-)	internal_stop_codon	322876..322878(-),323101..323103(-)		WP_004080936.1	30S ribosomal protein S2	87.3	23.7	56.5
MGA_489	LOCUS_04890	sequence1:328022..328681(+)	internal_stop_codon	327914..327916(+),328679..328681(+),327869..327871(+)		WP_003700790.1	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	99.5	46.1	50.0
MGA_491	LOCUS_04910	sequence1:329191..329514(+)	internal_stop_codon	329596..329598(+),329158..329160(+),329512..329514(+)		WP_010966271.1	TatD family hydrolase	89.7	39.1	48.5
MGA_492	LOCUS_04920	sequence1:329611..329880(+)	internal_stop_codon	329596..329598(+),329512..329514(+)		WP_005482770.1	YchF/TatD family DNA exonuclease	97.8	34.1	42.5
MGA_493	LOCUS_04930	sequence1:329880..330464(+)	internal_stop_codon	330462..330464(+)		WP_011166215.1	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	93.8	70.7	47.6
MGA_494	LOCUS_04940	sequence1:331184..331429(+)	internal_stop_codon	331172..331174(+),331427..331429(+),331517..331519(+),331664..331666(+),331094..331096(+)		WP_011166246.1	AEC family transporter	95.1	21.9	46.4
MGA_499	LOCUS_04990	sequence1:334731..335300(-)	internal_stop_codon	334731..334733(-)		WP_003548928.1	ABC transporter ATP-binding protein	91.5	55.6	48.6
MGA_500	LOCUS_05000	sequence1:335275..335715(-)	internal_stop_codon	335746..335748(-)		WP_003226700.1	hypoxanthine phosphoribosyltransferase	93.8	76.1	54.7
MGA_507	LOCUS_05070	sequence1:338174..340096(-)	internal_stop_codon	340328..340330(-),340202..340204(-)		WP_011166380.1	alanine--tRNA ligase	97.0	72.7	34.4
MGA_508	LOCUS_05080	sequence1:340388..340633(-)	internal_stop_codon	340763..340765(-),340388..340390(-),340202..340204(-),340328..340330(-),340682..340684(-)		WP_011183510.1	alanine--tRNA ligase	97.5	9.1	71.6
MGA_509	LOCUS_05090	sequence1:340801..341043(-)	internal_stop_codon	341074..341076(-)		WP_001038010.1	tRNA 2-thiouridine(34) synthase MnmA	83.8	18.1	53.7
MGA_510	LOCUS_05100	sequence1:341074..341691(-)	internal_stop_codon	341806..341808(-),341074..341076(-)		WP_202943733.1	tRNA 2-thiouridine(34) synthase MnmA	98.5	55.2	63.9
MGA_511	LOCUS_05110	sequence1:342119..342688(+)	internal_stop_codon	342686..342688(+)		WP_011183134.1	signal recognition particle-docking protein FtsY	98.9	54.0	41.0
MGA_512	LOCUS_05120	sequence1:342704..343171(+)	internal_stop_codon	342686..342688(+)		WP_011183134.1	signal recognition particle-docking protein FtsY	93.5	39.5	61.4
MGA_529	LOCUS_05290	sequence1:352233..352562(-)	internal_stop_codon	352620..352622(-)		WP_001250038.1	50S ribosomal protein L13	100.0	75.2	56.9
MGA_530	LOCUS_05300	sequence1:353376..353804(-)	internal_stop_codon	353808..353810(-)		WP_012546112.1	16S rRNA (uracil(1498)-N(3))-methyltransferase	93.7	55.1	42.6
MGA_532	LOCUS_05320	sequence1:354053..354394(-)	internal_stop_codon	354443..354445(-),354533..354535(-),354455..354457(-)		WP_002899531.1	ATP-binding cassette domain-containing protein	99.1	20.7	47.3
MGA_533	LOCUS_05330	sequence1:354533..354739(-)	internal_stop_codon	354455..354457(-),354533..354535(-),354743..354745(-),354443..354445(-),354950..354952(-)		WP_003702586.1	ATP-binding cassette domain-containing protein	98.5	12.2	44.8
MGA_534	LOCUS_05340	sequence1:354743..354922(-)	internal_stop_codon	354533..354535(-),354743..354745(-),355091..355093(-),354950..354952(-)		WP_041168847.1	ATP-binding cassette domain-containing protein	100.0	10.7	69.5
MGA_535	LOCUS_05350	sequence1:355283..355669(-)	internal_stop_codon	355283..355285(-),355223..355225(-),355091..355093(-)		WP_010905087.1	ATP-binding cassette domain-containing protein	100.0	23.5	58.6
MGA_537	LOCUS_05370	sequence1:357042..357677(-)	internal_stop_codon	357888..357890(-),357042..357044(-),356955..356957(-)		WP_003722642.1	preprotein translocase subunit SecA	100.0	25.4	44.0
MGA_538	LOCUS_05380	sequence1:357888..359084(-)	internal_stop_codon	357888..357890(-)		WP_000579368.1	preprotein translocase subunit SecA	99.0	47.3	56.7
MGA_543	LOCUS_05430	sequence1:361591..362094(+)	internal_stop_codon	362224..362226(+),362161..362163(+),362092..362094(+)		WP_010874776.1	glycerophosphoryl diester phosphodiesterase	100.0	69.3	54.5
MGA_544	LOCUS_05440	sequence1:362679..363845(-)	partial			WP_003436264.1	excinuclease ABC subunit UvrC	95.6	60.8	28.6
MGA_545	LOCUS_05450	sequence1:363921..364295(-)	internal_stop_codon	364353..364355(-),363921..363923(-)		WP_005813065.1	excinuclease ABC subunit UvrC	97.6	20.0	38.8
MGA_547	LOCUS_05470	sequence1:364550..364963(-)	internal_stop_codon	364964..364966(-),365225..365227(-),364550..364552(-)		WP_010874786.1	type I glyceraldehyde-3-phosphate dehydrogenase	100.0	40.4	62.0
MGA_548	LOCUS_05480	sequence1:365225..365482(-)	internal_stop_codon	364964..364966(-),365225..365227(-)		WP_000161236.1	type I glyceraldehyde-3-phosphate dehydrogenase	100.0	24.9	65.9
MGA_559	LOCUS_05590	sequence1:372680..373108(+)	partial			WP_010874829.1	alpha/beta hydrolase	73.9	39.9	31.8
MGA_562	LOCUS_05620	sequence1:374418..374906(+)	partial			WP_011183085.1	translation initiation factor IF-3	82.1	74.4	53.3
MGA_564	LOCUS_05640	sequence1:375349..375486(+)	internal_stop_codon	375319..375321(+),375265..375267(+),375187..375189(+)		WP_011183087.1	50S ribosomal protein L20	88.9	33.3	70.0
MGA_565	LOCUS_05650	sequence1:375541..376107(+)	partial			WP_002377949.1	thermonuclease family protein	76.1	62.9	34.0
MGA_566	LOCUS_05660	sequence1:376337..376609(+)	partial			WP_011182983.1	ECF transporter S component	75.6	22.3	44.1
MGA_572	LOCUS_05720	sequence1:380653..381639(+)	internal_stop_codon	381637..381639(+)		WP_002356165.1	pyrimidine-nucleoside phosphorylase	99.4	75.3	60.1
MGA_573	LOCUS_05730	sequence1:381724..381948(+)	internal_stop_codon	381637..381639(+)		WP_010905974.1	pyrimidine-nucleoside phosphorylase	100.0	17.2	43.2
MGA_574	LOCUS_05740	sequence1:381957..382082(+)	internal_stop_codon	382080..382082(+)		WP_000773685.1	deoxyribose-phosphate aldolase	95.1	17.7	64.1
MGA_575	LOCUS_05750	sequence1:382158..382619(+)	internal_stop_codon	382080..382082(+)		WP_013448021.1	deoxyribose-phosphate aldolase	99.3	68.5	53.3
MGA_576	LOCUS_05760	sequence1:382764..382961(-)	internal_stop_codon	383217..383219(-),383109..383111(-),383031..383033(-),382764..382766(-)		WP_013533374.1	methionine adenosyltransferase	100.0	16.6	69.2
MGA_577	LOCUS_05770	sequence1:383217..383381(-)	internal_stop_codon	383394..383396(-),383217..383219(-),383109..383111(-),383031..383033(-)		WP_011183137.1	methionine adenosyltransferase	100.0	14.3	50.0
MGA_578	LOCUS_05780	sequence1:383394..383858(-)	internal_stop_codon	383394..383396(-),383217..383219(-),383109..383111(-)		WP_004082170.1	methionine adenosyltransferase	98.1	42.0	50.6
MGA_580	LOCUS_05800	sequence1:385319..385612(+)	internal_stop_codon	385610..385612(+)		WP_001217125.1	pseudouridine synthase	86.6	37.2	37.2
MGA_581	LOCUS_05810	sequence1:385736..385966(+)	internal_stop_codon	385964..385966(+),385610..385612(+)		WP_011860778.1	pseudouridine synthase	64.5	20.4	63.3
MGA_585	LOCUS_05850	sequence1:389589..389930(-)	partial			WP_010874510.1	AAA domain-containing protein	61.1	6.2	45.7
MGA_591	LOCUS_05910	sequence1:393758..394129(-)	internal_stop_codon	393758..393760(-),393593..393595(-)		WP_010922487.1	deoxyribodipyrimidine photo-lyase	96.7	25.6	26.7
MGA_592	LOCUS_05920	sequence1:394912..395277(+)	internal_stop_codon	395380..395382(+),395275..395277(+),394897..394899(+)		WP_011183201.1	DNA (cytosine-5-)-methyltransferase	95.9	25.1	32.8
MGA_607	LOCUS_06070	sequence1:402613..402810(-)	internal_stop_codon	402613..402615(-),402604..402606(-)		WP_010888617.1	thymidine kinase	100.0	30.7	40.0
MGA_608	LOCUS_06080	sequence1:403501..403878(-)	internal_stop_codon	404082..404084(-),403501..403503(-),403438..403440(-),403947..403949(-)		WP_010874497.1	bifunctional oligoribonuclease/PAP phosphatase NrnA	92.8	36.4	58.5
MGA_609	LOCUS_06090	sequence1:404622..404849(-)	internal_stop_codon	404415..404417(-),404622..404624(-),404478..404480(-)		WP_010874497.1	bifunctional oligoribonuclease/PAP phosphatase NrnA	93.3	24.1	51.3
MGA_611	LOCUS_06110	sequence1:405703..406431(-)	internal_stop_codon	406654..406656(-),406585..406587(-),405673..405675(-),405685..405687(-),405703..405705(-)		WP_150670707.1	DUF4011 domain-containing protein	95.9	13.2	46.2
MGA_612	LOCUS_06120	sequence1:406654..407475(-)	internal_stop_codon	406654..406656(-),406585..406587(-)		WP_008363296.1	DUF4011 domain-containing protein	100.0	17.2	32.2
MGA_614	LOCUS_06140	sequence1:408157..408900(-)	internal_stop_codon	408952..408954(-),408157..408159(-)		WP_011166830.1	DUF4011 domain-containing protein	98.8	38.1	39.4
MGA_618	LOCUS_06180	sequence1:412139..412408(-)	internal_stop_codon	412445..412447(-)		WP_011475786.1	threonine--tRNA ligase	97.8	13.4	40.2
MGA_619	LOCUS_06190	sequence1:412445..412657(-)	internal_stop_codon	412445..412447(-),412751..412753(-)		WP_011166459.1	threonine--tRNA ligase	98.6	10.8	71.0
MGA_620	LOCUS_06200	sequence1:412751..413257(-)	internal_stop_codon	412751..412753(-),413453..413455(-),413402..413404(-),413270..413272(-)		WP_011166459.1	threonine--tRNA ligase	98.8	26.4	50.9
MGA_621	LOCUS_06210	sequence1:413453..413881(-)	internal_stop_codon	413453..413455(-),413402..413404(-),413270..413272(-)		WP_000435143.1	threonine--tRNA ligase	99.3	21.2	40.0
MGA_623	LOCUS_06230	sequence1:414087..414563(-)	internal_stop_codon	414603..414605(-),414087..414089(-)		WP_003245134.1	tryptophan--tRNA ligase	100.0	46.4	56.6
MGA_624	LOCUS_06240	sequence1:414603..414878(-)	internal_stop_codon	414603..414605(-)		WP_011143004.1	tryptophan--tRNA ligase	97.8	26.2	55.1
MGA_626	LOCUS_06260	sequence1:415286..415450(+)	internal_stop_codon	415448..415450(+),415238..415240(+),415490..415492(+),415457..415459(+),415475..415477(+),415214..415216(+)		WP_011182943.1	FMN-dependent NADH-azoreductase	98.1	26.6	56.6
MGA_627	LOCUS_06270	sequence1:416103..416273(-)	internal_stop_codon	416382..416384(-)		WP_002289444.1	deoxyribonuclease IV	98.2	18.3	67.3
MGA_628	LOCUS_06280	sequence1:416382..416876(-)	internal_stop_codon	416382..416384(-)		WP_010874684.1	deoxyribonuclease IV	98.2	57.3	41.5
MGA_635	LOCUS_06350	sequence1:420623..421291(-)	internal_stop_codon	420623..420625(-)		WP_011173700.1	type I methionyl aminopeptidase	98.6	84.3	47.3
MGA_637	LOCUS_06370	sequence1:421960..422352(-)	internal_stop_codon	422431..422433(-)		WP_011183039.1	preprotein translocase subunit SecY	76.9	20.6	40.0
MGA_638	LOCUS_06380	sequence1:422431..423288(-)	internal_stop_codon	422431..422433(-)		WP_010874541.1	preprotein translocase subunit SecY	97.5	57.2	37.8
MGA_641	LOCUS_06410	sequence2:1501..2337(-)	partial			WP_002852206.1	bifunctional riboflavin kinase/FAD synthetase	60.1	54.9	31.4
MGA_643	LOCUS_06430	sequence2:3143..3394(-)	partial			WP_001041232.1	Cof-type HAD-IIB family hydrolase	96.4	30.1	44.4
MGA_649	LOCUS_06490	sequence2:5825..6295(+)	internal_stop_codon	5750..5752(+)		WP_011183117.1	protein phosphatase 2C domain-containing protein	94.2	58.7	33.5
MGA_650	LOCUS_06500	sequence2:6279..7004(+)	internal_stop_codon	7002..7004(+),7068..7070(+)		WP_000579563.1	serine/threonine protein kinase Stk1	95.9	35.5	38.4
MGA_651	LOCUS_06510	sequence2:7273..7623(+)	internal_stop_codon	7621..7623(+)		WP_003232060.1	ribosome small subunit-dependent GTPase A	94.8	39.6	45.8
MGA_652	LOCUS_06520	sequence2:7642..8106(+)	internal_stop_codon	7621..7623(+)		WP_003232060.1	ribosome small subunit-dependent GTPase A	99.4	51.3	41.9
MGA_654	LOCUS_06540	sequence2:8909..9088(+)	internal_stop_codon	9344..9346(+),9086..9088(+),9176..9178(+)		WP_010874664.1	APC family permease	69.5	7.3	65.9
MGA_655	LOCUS_06550	sequence2:10007..10444(+)	internal_stop_codon	9803..9805(+),9896..9898(+),9956..9958(+)		WP_010874664.1	APC family permease	100.0	28.8	34.1
MGA_656	LOCUS_06560	sequence2:10571..10855(+)	internal_stop_codon	10853..10855(+),10856..10858(+)		WP_011166695.1	DNA topoisomerase IV subunit A	93.6	9.8	75.0
MGA_657	LOCUS_06570	sequence2:10862..11914(+)	internal_stop_codon	10853..10855(+),11912..11914(+),10856..10858(+)		WP_011166695.1	DNA topoisomerase IV subunit A	99.7	38.0	50.1
MGA_658	LOCUS_06580	sequence2:11993..12301(+)	internal_stop_codon	12383..12385(+),11912..11914(+),12299..12301(+)		WP_002357527.1	DNA topoisomerase IV subunit A	95.1	11.8	35.1
MGA_670	LOCUS_06700	sequence2:20366..20731(+)	internal_stop_codon	20357..20359(+),20729..20731(+),20888..20890(+),20882..20884(+)		WP_011964265.1	site-specific DNA-methyltransferase	94.2	19.0	43.0
MGA_671	LOCUS_06710	sequence2:21005..21328(+)	partial			WP_011202294.1	site-specific DNA-methyltransferase	92.5	17.1	51.0
MGA_680	LOCUS_06800	sequence2:27534..27722(-)	partial			WP_001829942.1	ATP synthase F1 subunit gamma	96.8	20.8	61.7
MGA_681	LOCUS_06810	sequence2:28029..28394(-)	internal_stop_codon	28029..28031(-)		WP_003437835.1	ATP synthase F1 subunit gamma	99.2	40.8	32.2
MGA_682	LOCUS_06820	sequence2:28397..29227(-)	internal_stop_codon	29228..29230(-)		WP_011167040.1	F0F1 ATP synthase subunit alpha	97.8	51.4	57.4
MGA_683	LOCUS_06830	sequence2:29228..29974(-)	internal_stop_codon	29228..29230(-)		WP_011183010.1	F0F1 ATP synthase subunit alpha	100.0	47.2	60.1
MGA_690	LOCUS_06900	sequence2:33187..33711(+)	internal_stop_codon	33007..33009(+),33760..33762(+),33709..33711(+),33073..33075(+),32998..33000(+),33712..33714(+)		WP_000148852.1	glucose-6-phosphate isomerase	99.4	38.6	53.2
MGA_691	LOCUS_06910	sequence2:33808..34170(+)	internal_stop_codon	33712..33714(+),33760..33762(+),33709..33711(+)		WP_011183151.1	glucose-6-phosphate isomerase	99.2	28.2	51.7
MGA_692	LOCUS_06920	sequence2:34558..34728(-)	internal_stop_codon	34558..34560(-)		WP_000766080.1	50S ribosomal protein L15	96.4	38.4	51.8
MGA_698	LOCUS_06980	sequence2:36867..37103(-)	internal_stop_codon	37128..37130(-),37188..37190(-)		WP_003435673.1	50S ribosomal protein L5	94.9	41.1	64.9
MGA_699	LOCUS_06990	sequence2:37188..37412(-)	internal_stop_codon	37128..37130(-),37188..37190(-)		WP_003549036.1	50S ribosomal protein L5	98.6	40.6	60.3
MGA_704	LOCUS_07040	sequence2:39035..39283(-)	internal_stop_codon	39035..39037(-)		WP_002356207.1	30S ribosomal protein S3	98.8	37.2	65.4
MGA_714	LOCUS_07140	sequence2:45322..46743(-)	internal_stop_codon	46750..46752(-)		WP_011166497.1	ribonuclease J	97.5	79.9	25.3
MGA_715	LOCUS_07150	sequence2:46750..46989(-)	internal_stop_codon	46750..46752(-)		WP_011166497.1	ribonuclease J	100.0	13.6	48.1
MGA_718	LOCUS_07180	sequence2:49182..50342(-)	internal_stop_codon	50364..50366(-),50343..50345(-)		WP_011183314.1	molecular chaperone DnaK	98.2	64.0	52.0
MGA_719	LOCUS_07190	sequence2:50364..50975(-)	internal_stop_codon	50364..50366(-),50343..50345(-)		WP_010874790.1	molecular chaperone DnaK	98.0	34.3	73.0
MGA_722	LOCUS_07220	sequence2:52150..52794(-)	partial			WP_003703155.1	heat-inducible transcriptional repressor HrcA	89.7	55.4	26.1
MGA_726	LOCUS_07260	sequence2:54813..55025(-)	internal_stop_codon	55032..55034(-)		WP_000174221.1	phosphoenolpyruvate--protein phosphotransferase	97.1	11.9	63.2
MGA_727	LOCUS_07270	sequence2:55032..55562(-)	internal_stop_codon	55611..55613(-),55032..55034(-)		WP_011183417.1	phosphoenolpyruvate--protein phosphotransferase	100.0	30.4	67.6
MGA_728	LOCUS_07280	sequence2:55611..56516(-)	internal_stop_codon	55611..55613(-)		WP_152804487.1	phosphoenolpyruvate--protein phosphotransferase	98.7	52.3	45.2
MGA_733	LOCUS_07320	sequence2:59803..60618(-)	internal_stop_codon	59737..59739(-),59803..59805(-)		WP_003645655.1	trigger factor	96.3	56.6	33.0
MGA_735	LOCUS_07340	sequence2:62144..62518(-)	internal_stop_codon	62528..62530(-)		WP_010947462.1	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	99.2	26.3	34.6
MGA_736	LOCUS_07350	sequence2:62528..63427(-)	internal_stop_codon	62528..62530(-)		WP_011183059.1	amidase family protein	93.6	60.0	42.5
MGA_741	LOCUS_07400	sequence2:65901..66284(-)	internal_stop_codon	66297..66299(-)		WP_000616588.1	lysophospholipid acyltransferase family protein	96.1	51.5	33.1
MGA_745	LOCUS_07440	sequence2:67478..67837(-)	internal_stop_codon	67838..67840(-),67922..67924(-),68033..68035(-)		WP_011183547.1	glutamate--tRNA ligase	96.6	24.5	37.2
MGA_746	LOCUS_07450	sequence2:68033..68167(-)	internal_stop_codon	68336..68338(-),67922..67924(-),68033..68035(-),68189..68191(-)		WP_011837577.1	glutamate--tRNA ligase	100.0	9.3	71.1
MGA_747	LOCUS_07460	sequence2:68699..68890(-)	internal_stop_codon	68699..68701(-)		WP_010875035.1	glutamate--tRNA ligase	98.4	12.8	79.0
MGA_751	LOCUS_07500	sequence2:70899..71066(+)	internal_stop_codon	71064..71066(+)		WP_010965062.1	30S ribosomal protein S16	94.5	64.2	61.5
MGA_752	LOCUS_07510	sequence2:71150..71758(+)	internal_stop_codon	71756..71758(+),71774..71776(+)		WP_011016280.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	100.0	83.6	58.6
MGA_754	LOCUS_07530	sequence2:72360..72674(+)	partial			WP_002455871.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	66.3	49.0	42.7
MGA_756	LOCUS_07550	sequence2:73726..74271(+)	internal_stop_codon	74269..74271(+)		WP_011016472.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	98.9	53.4	47.0
MGA_757	LOCUS_07560	sequence2:74322..74699(+)	partial			WP_012048269.1	sugar-phosphatase	88.8	44.0	30.5
MGA_758	LOCUS_07570	sequence2:74700..75170(+)	partial			WP_012583591.1	Cof-type HAD-IIB family hydrolase	82.7	50.2	30.2
MGA_760	LOCUS_07590	sequence2:75697..76110(-)	partial			WP_004454798.1	Cof-type HAD-IIB family hydrolase	86.1	43.2	38.1
MGA_761	LOCUS_07600	sequence2:76210..76599(-)	partial			WP_001182436.1	Cof-type HAD-IIB family hydrolase	89.1	41.2	31.3
MGA_763	LOCUS_07620	sequence2:76763..77173(-)	internal_stop_codon	77210..77212(-),76763..76765(-)		WP_002987910.1	L-ribulose-5-phosphate 4-epimerase	99.3	57.7	65.9
MGA_764	LOCUS_07630	sequence2:77431..77604(-)	internal_stop_codon	77683..77685(-),77620..77622(-),77431..77433(-)		WP_010874848.1	L-ribulose-5-phosphate 3-epimerase	100.0	18.7	42.1
MGA_765	LOCUS_07640	sequence2:77683..77976(-)	internal_stop_codon	78040..78042(-),77683..77685(-),77620..77622(-)		WP_005693360.1	L-ribulose-5-phosphate 3-epimerase	96.9	32.9	62.8
MGA_766	LOCUS_07650	sequence2:78040..78210(-)	internal_stop_codon	78040..78042(-)		WP_010874848.1	L-ribulose-5-phosphate 3-epimerase	100.0	18.0	58.9
MGA_767	LOCUS_07660	sequence2:78191..78352(-)	internal_stop_codon	78461..78463(-),78392..78394(-),78431..78433(-),78479..78481(-)		WP_010874849.1	3-dehydro-L-gulonate-6-phosphate decarboxylase	100.0	24.3	69.8
MGA_768	LOCUS_07670	sequence2:78479..78841(-)	internal_stop_codon	78461..78463(-),78392..78394(-),78431..78433(-),78479..78481(-)		WP_010874849.1	3-dehydro-L-gulonate-6-phosphate decarboxylase	100.0	55.0	55.8
MGA_769	LOCUS_07680	sequence2:78886..79176(-)	internal_stop_codon	79291..79293(-)		WP_001050067.1	PTS sugar transporter subunit IIA	99.0	58.4	47.4
MGA_771	LOCUS_07700	sequence2:79948..80430(-)	internal_stop_codon	80467..80469(-),80446..80448(-)		WP_010874852.1	PTS ascorbate transporter subunit IIC	83.1	20.3	56.7
MGA_775	LOCUS_07740	sequence2:81519..82214(-)	internal_stop_codon	82248..82250(-),82257..82259(-)		WP_205842938.1	phosphotriesterase	92.2	60.7	82.2
MGA_776	LOCUS_07750	sequence2:82257..82577(-)	internal_stop_codon	82248..82250(-),82257..82259(-)		WP_205842938.1	phosphotriesterase	100.0	29.9	67.0
MGA_782	LOCUS_07810	sequence2:84469..85260(-)	internal_stop_codon	85270..85272(-)		WP_048064463.1	M42 family metallopeptidase	92.4	71.2	38.2
MGA_783	LOCUS_07820	sequence2:85270..85551(-)	internal_stop_codon	85270..85272(-)		WP_010905311.1	glutamyl aminopeptidase	92.5	24.8	40.9
MGA_786	LOCUS_07850	sequence2:86351..87130(-)	internal_stop_codon	87233..87235(-)		WP_011183495.1	DNA-directed RNA polymerase subunit beta'	64.1	13.2	53.0
MGA_787	LOCUS_07860	sequence2:87233..88000(-)	internal_stop_codon	87233..87235(-),88073..88075(-)		WP_000567936.1	DNA-directed RNA polymerase subunit beta'	98.4	19.5	57.1
MGA_788	LOCUS_07870	sequence2:88073..88282(-)	internal_stop_codon	88073..88075(-)		WP_002438689.1	DNA-directed RNA polymerase subunit beta'	94.2	5.4	41.5
MGA_789	LOCUS_07880	sequence2:88340..89248(-)	internal_stop_codon	89306..89308(-),89396..89398(-),88073..88075(-)		WP_004399688.1	DNA-directed RNA polymerase subunit beta'	76.8	17.8	43.1
MGA_790	LOCUS_07890	sequence2:89396..89674(-)	internal_stop_codon	89306..89308(-),89693..89695(-),89396..89398(-)		WP_010931850.1	DNA-directed RNA polymerase subunit beta'	98.9	6.1	67.0
MGA_791	LOCUS_07900	sequence2:89693..90334(-)	internal_stop_codon	90398..90400(-),89693..89695(-)		WP_011183495.1	DNA-directed RNA polymerase subunit beta'	91.5	14.8	33.7
MGA_792	LOCUS_07910	sequence2:90741..90977(-)	internal_stop_codon	91005..91007(-)		WP_011167152.1	DNA-directed RNA polymerase subunit beta	98.7	6.0	49.4
MGA_793	LOCUS_07920	sequence2:91005..91550(-)	internal_stop_codon	91005..91007(-)		WP_011183496.1	DNA-directed RNA polymerase subunit beta	97.8	14.3	72.1
MGA_794	LOCUS_07930	sequence2:91953..93164(-)	internal_stop_codon	93165..93167(-),91953..91955(-)		WP_011183496.1	DNA-directed RNA polymerase subunit beta	99.0	30.9	51.9
MGA_796	LOCUS_07950	sequence2:93795..94343(-)	internal_stop_codon	93795..93797(-)		WP_002295964.1	DNA-directed RNA polymerase subunit beta	81.9	11.6	35.6
MGA_797	LOCUS_07960	sequence2:94513..95424(-)	internal_stop_codon	95473..95475(-)		WP_002289572.1	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	95.7	84.2	31.1
MGA_800	LOCUS_07990	sequence2:97650..98276(-)	internal_stop_codon	98310..98312(-)		WP_011183374.1	proline--tRNA ligase	100.0	42.9	39.7
MGA_801	LOCUS_08000	sequence2:98310..98555(-)	internal_stop_codon	98658..98660(-),98676..98678(-),98613..98615(-),98310..98312(-)		WP_005793720.1	proline--tRNA ligase	100.0	16.3	56.8
MGA_802	LOCUS_08010	sequence2:98676..98876(-)	internal_stop_codon	98658..98660(-),98676..98678(-),99036..99038(-),98613..98615(-),98946..98948(-)		WP_011183374.1	proline--tRNA ligase	100.0	14.0	60.6
MGA_804	LOCUS_08030	sequence2:100183..100476(-)	internal_stop_codon	100156..100158(-),100183..100185(-),100501..100503(-)		WP_010989583.1	cation-translocating P-type ATPase	85.6	9.5	65.1
MGA_805	LOCUS_08040	sequence2:100501..100860(-)	internal_stop_codon	100879..100881(-),100501..100503(-)		WP_011861573.1	cation-translocating P-type ATPase	100.0	13.5	55.5
MGA_806	LOCUS_08050	sequence2:100879..101445(-)	internal_stop_codon	100879..100881(-),101476..101478(-)		WP_003721406.1	calcium-transporting ATPase	92.6	20.2	41.8
MGA_807	LOCUS_08060	sequence2:101476..102189(-)	internal_stop_codon	101476..101478(-),102223..102225(-)		WP_002289743.1	cation-translocating P-type ATPase	94.9	23.7	40.8
MGA_808	LOCUS_08070	sequence2:102498..102800(-)	internal_stop_codon	102912..102914(-)		WP_001829595.1	phosphopyruvate hydratase	95.0	21.9	83.2
MGA_809	LOCUS_08080	sequence2:102912..103661(-)	internal_stop_codon	103788..103790(-),102912..102914(-),103680..103682(-)		WP_003643976.1	phosphopyruvate hydratase	99.2	52.3	55.9
MGA_811	LOCUS_08100	sequence2:105080..105709(+)	partial			WP_002262256.1	peptide chain release factor N(5)-glutamine methyltransferase	94.3	72.3	40.8
MGA_812	LOCUS_08110	sequence2:105954..106532(-)	internal_stop_codon	105954..105956(-)		WP_003435873.1	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	98.4	68.6	48.4
MGA_813	LOCUS_08120	sequence2:106813..107253(-)	partial			WP_003131573.1	DNA polymerase III subunit delta'	97.9	49.7	26.6
MGA_821	LOCUS_08200	sequence2:110021..110887(-)	partial			WP_000121572.1	DNA polymerase III subunit gamma/tau	98.3	50.9	46.3
MGA_822	LOCUS_08210	sequence2:111237..111389(+)	internal_stop_codon	111387..111389(+),111498..111500(+),111111..111113(+)		WP_010887551.1	DNA gyrase subunit B	100.0	7.5	64.0
MGA_823	LOCUS_08220	sequence2:111513..111758(+)	internal_stop_codon	111756..111758(+),111387..111389(+),111498..111500(+)		WP_003231552.1	DNA topoisomerase IV subunit B	100.0	12.4	48.1
MGA_824	LOCUS_08230	sequence2:112131..112634(+)	internal_stop_codon	112851..112853(+),112632..112634(+),112062..112064(+),112731..112733(+)		WP_003231552.1	DNA topoisomerase IV subunit B	97.0	24.7	69.1
MGA_844	LOCUS_08430	sequence2:131036..135238(-)	partial			WP_080388512.1	hyperosmolarity resistance protein Ebh	92.9	12.4	20.2
MGA_848	LOCUS_08470	sequence2:138520..138948(+)	internal_stop_codon	138946..138948(+)		WP_011166290.1	asparagine--tRNA ligase	97.9	30.8	55.2
MGA_849	LOCUS_08480	sequence2:138949..139464(+)	internal_stop_codon	139462..139464(+),138946..138948(+)		WP_000220370.1	asparagine--tRNA ligase	99.4	36.3	51.8
MGA_850	LOCUS_08490	sequence2:139869..140567(+)	internal_stop_codon	139722..139724(+),139809..139811(+)		WP_011861133.1	nucleotidyltransferase	97.4	60.1	29.6
MGA_851	LOCUS_08500	sequence2:140772..141116(+)	internal_stop_codon	141114..141116(+)		WP_003546838.1	peptide deformylase	93.0	59.8	44.5
MGA_858	LOCUS_08570	sequence2:144003..144170(+)	internal_stop_codon	144168..144170(+)		WP_001189766.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	96.4	26.6	49.1
MGA_859	LOCUS_08580	sequence2:144174..144545(+)	internal_stop_codon	144168..144170(+)		WP_002983819.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	91.9	63.7	33.9
MGA_862	LOCUS_08610	sequence2:145271..145639(+)	internal_stop_codon	145637..145639(+)		WP_003733116.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	98.4	27.2	36.8
MGA_863	LOCUS_08620	sequence2:146316..146813(+)	internal_stop_codon	146283..146285(+)		WP_003707884.1	ribonuclease HII	92.1	59.6	44.7
MGA_864	LOCUS_08630	sequence2:146877..147683(+)	partial			WP_011183049.1	energy-coupling factor transporter ATPase	92.9	61.1	53.8
MGA_865	LOCUS_08640	sequence2:148097..148639(+)	partial			WP_000510420.1	energy-coupling factor transporter ATPase	90.6	58.4	45.4
MGA_866	LOCUS_08650	sequence2:148639..149130(+)	partial			WP_003733033.1	energy-coupling factor transporter transmembrane protein EcfT	56.4	34.7	30.4
MGA_867	LOCUS_08660	sequence2:149227..149700(+)	partial			WP_011183051.1	energy-coupling factor transporter transmembrane component T	91.1	43.1	58.0
MGA_868	LOCUS_08670	sequence2:150058..150363(-)	internal_stop_codon	150037..150039(-),150058..150060(-),149884..149886(-),149803..149805(-)		WP_003723580.1	tRNA (guanosine(46)-N7)-methyltransferase TrmB	68.3	32.7	40.0
MGA_871	LOCUS_08700	sequence2:152354..153241(-)	internal_stop_codon	152336..152338(-),152354..152356(-)		WP_002355971.1	redox-regulated ATPase YchF	100.0	80.9	52.0
MGA_872	LOCUS_08710	sequence2:153327..153470(-)	internal_stop_codon	153501..153503(-),153609..153611(-)		WP_010874750.1	FAD-dependent oxidoreductase	91.5	9.0	62.8
MGA_873	LOCUS_08720	sequence2:153609..154307(-)	internal_stop_codon	154350..154352(-),153609..153611(-),153501..153503(-),154554..154556(-)		WP_002676360.1	FAD-dependent oxidoreductase	95.7	49.5	42.2
MGA_874	LOCUS_08730	sequence2:154350..154553(-)	internal_stop_codon	154350..154352(-),154554..154556(-)		WP_011949122.1	FAD-dependent oxidoreductase	98.5	11.7	39.4
MGA_875	LOCUS_08740	sequence2:154554..154694(-)	internal_stop_codon	154350..154352(-),154554..154556(-)		WP_010874750.1	FAD-dependent oxidoreductase	97.8	9.4	66.7
MGA_876	LOCUS_08750	sequence2:154854..155027(+)	internal_stop_codon	155025..155027(+),155319..155321(+),155307..155309(+),155049..155051(+)		WP_013448152.1	phosphotransferase	96.5	23.1	50.9
MGA_877	LOCUS_08760	sequence2:155073..155309(+)	internal_stop_codon	155430..155432(+),155445..155447(+),155049..155051(+),155319..155321(+),155025..155027(+),155484..155486(+),155307..155309(+)		WP_013448152.1	phosphotransferase	96.2	31.5	40.0
MGA_881	LOCUS_08800	sequence2:157642..158319(+)	internal_stop_codon	158464..158466(+),158317..158319(+),158353..158355(+)		WP_011166548.1	PolC-type DNA polymerase III	95.1	15.0	39.1
MGA_882	LOCUS_08810	sequence2:158530..159105(+)	internal_stop_codon	159349..159351(+),158464..158466(+),158317..158319(+),158353..158355(+),159103..159105(+)		WP_011166548.1	PolC-type DNA polymerase III	98.4	12.9	34.9
MGA_883	LOCUS_08820	sequence2:159439..159969(+)	internal_stop_codon	159349..159351(+),159967..159969(+)		WP_002288497.1	PolC-type DNA polymerase III	97.7	11.8	62.2
MGA_884	LOCUS_08830	sequence2:160009..160308(+)	internal_stop_codon	160306..160308(+),160585..160587(+),160597..160599(+),160510..160512(+),159967..159969(+)		WP_011183185.1	PolC-type DNA polymerase III	100.0	6.6	67.7
MGA_885	LOCUS_08840	sequence2:160384..160512(+)	internal_stop_codon	160306..160308(+),160585..160587(+),160597..160599(+),160510..160512(+)		WP_011166548.1	PolC-type DNA polymerase III	100.0	2.8	57.1
MGA_888	LOCUS_08870	sequence2:162404..162571(-)	frameshift,internal_stop_codon	162404..162406(-),162581..162583(-),162806..162808(-),162575..162577(-)	162178,162223	WP_011166954.1	ABC transporter permease subunit	98.2	8.9	53.7
MGA_891	LOCUS_08900	sequence2:163808..163990(-)	internal_stop_codon	164081..164083(-)		WP_011166967.1	ABC transporter substrate-binding protein	88.3	10.9	49.1
MGA_894	LOCUS_08930	sequence2:165216..166169(-)	partial			WP_010874438.1	ABC transporter ATP-binding protein	78.9	53.3	47.2
MGA_907	LOCUS_09060	sequence2:174197..175717(-)	internal_stop_codon	175769..175771(-)		WP_011183568.1	ATP-dependent zinc metalloprotease FtsH	97.0	75.5	52.5
MGA_911	LOCUS_09100	sequence2:177640..179169(-)	partial			WP_010724991.1	ATP-dependent RecD-like DNA helicase	96.1	66.6	29.0
MGA_914	LOCUS_09130	sequence2:180508..181251(-)	internal_stop_codon	180508..180510(-)		WP_010921762.1	DNA polymerase III subunit beta	98.8	65.6	23.0
MGA_915	LOCUS_09140	sequence2:181440..182054(-)	partial			WP_010882957.1	chromosomal replication initiator protein DnaA	96.6	42.6	31.0
MGA_917	LOCUS_09160	sequence2:183005..183232(+)	internal_stop_codon	183230..183232(+)		WP_010867902.1	ABC transporter ATP-binding protein	77.3	19.0	63.8
MGA_918	LOCUS_09170	sequence2:183353..183574(+)	internal_stop_codon	183230..183232(+),183572..183574(+)		WP_002264876.1	ABC transporter ATP-binding protein	93.2	23.6	55.9
MGA_928	LOCUS_09270	sequence2:189092..189289(-)	internal_stop_codon	189059..189061(-),189092..189094(-),189458..189460(-)		WP_011166520.1	ABC transporter permease	93.8	10.2	46.8
MGA_930	LOCUS_09290	sequence2:189827..190141(-)	internal_stop_codon	189827..189829(-),190226..190228(-)		WP_011167069.1	ABC transporter permease	80.8	17.0	40.0
MGA_932	LOCUS_09310	sequence2:191102..191410(+)	internal_stop_codon	191408..191410(+)		WP_002262491.1	30S ribosomal protein S7	100.0	65.4	64.7
MGA_933	LOCUS_09320	sequence2:191447..191569(+)	internal_stop_codon	191408..191410(+)		WP_001137495.1	30S ribosomal protein S7	100.0	25.6	80.0
MGA_934	LOCUS_09330	sequence2:191590..191745(+)	internal_stop_codon	191803..191805(+),191947..191949(+),191743..191745(+)		WP_011166361.1	elongation factor G	100.0	7.4	88.2
MGA_935	LOCUS_09340	sequence2:192265..193113(+)	internal_stop_codon	192079..192081(+),193111..193113(+)		WP_011183519.1	elongation factor G	100.0	40.9	69.6
MGA_936	LOCUS_09350	sequence2:193225..193680(+)	internal_stop_codon	193111..193113(+)		WP_011393940.1	elongation factor G	94.7	20.5	65.7
MGA_938	LOCUS_09370	sequence2:194076..194306(+)	internal_stop_codon	194070..194072(+),193890..193892(+)		WP_011183273.1	tRNA (cytidine(34)-2'-O)-methyltransferase	100.0	42.5	51.3
MGA_947	LOCUS_09460	sequence2:197536..198117(+)	internal_stop_codon	197407..197409(+),198115..198117(+),197377..197379(+)		WP_011016673.1	NAD(P)/FAD-dependent oxidoreductase	99.5	42.0	52.6
MGA_952	LOCUS_09510	sequence2:199597..199803(+)	internal_stop_codon	199801..199803(+),199570..199572(+)		WP_003422928.1	histidine--tRNA ligase	86.8	14.3	51.7
MGA_953	LOCUS_09520	sequence2:199846..200478(+)	internal_stop_codon	199801..199803(+)		WP_004254776.1	histidine--tRNA ligase	97.1	47.0	46.6
MGA_955	LOCUS_09540	sequence2:200918..202042(+)	internal_stop_codon	202115..202117(+),202040..202042(+),200915..200917(+),202067..202069(+),202079..202081(+)		WP_011166529.1	aspartate--tRNA ligase	98.9	65.9	45.0
MGA_956	LOCUS_09550	sequence2:202268..202567(+)	internal_stop_codon	202079..202081(+),202067..202069(+),202115..202117(+),202040..202042(+)		WP_000044799.1	aspartate--tRNA ligase	89.9	15.1	55.1
MGA_960	LOCUS_09590	sequence2:203593..204357(+)	internal_stop_codon	204355..204357(+)		WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	96.9	73.1	42.3
MGA_963	LOCUS_09620	sequence2:205648..206070(+)	internal_stop_codon	206086..206088(+),206068..206070(+)		WP_003245970.1	protein translocase subunit SecDF	97.9	18.6	47.4
MGA_965	LOCUS_09640	sequence2:206761..207066(+)	internal_stop_codon	206665..206667(+)		WP_000749795.1	protein translocase subunit SecDF	97.0	12.6	45.9
MGA_966	LOCUS_09650	sequence2:207264..208229(+)	internal_stop_codon	208227..208229(+),208443..208445(+)		WP_011922805.1	GTPase ObgE	99.7	76.0	47.9
MGA_974	LOCUS_09730	sequence2:213127..213936(-)	internal_stop_codon	213127..213129(-)		WP_011183189.1	transcription termination factor NusA	96.7	52.7	31.9
MGA_986	LOCUS_09850	sequence2:221113..221604(-)	internal_stop_codon	221716..221718(-)		WP_010874435.1	fructose-specific PTS transporter subunit EIIC	97.5	22.6	49.1
MGA_988	LOCUS_09870	sequence2:222070..222603(-)	internal_stop_codon	222829..222831(-),221899..221901(-),222070..222072(-)		WP_010874435.1	fructose-specific PTS transporter subunit EIIC	90.4	23.2	51.9
MGA_991	LOCUS_09900	sequence2:223961..225625(-)	internal_stop_codon	225827..225829(-)		WP_011166660.1	chromosome segregation protein SMC	97.5	56.0	34.3
MGA_992	LOCUS_09910	sequence2:225827..226735(-)	internal_stop_codon	225827..225829(-),226778..226780(-)		WP_011166660.1	chromosome segregation protein SMC	100.0	31.2	31.2
MGA_993	LOCUS_09920	sequence2:226778..226915(-)	internal_stop_codon	226778..226780(-)		WP_000262698.1	chromosome segregation protein SMC	95.6	3.6	67.4
MGA_994	LOCUS_09930	sequence2:226918..227385(-)	partial			WP_003701755.1	ribonuclease III	96.8	66.4	29.9
MGA_996	LOCUS_09950	sequence2:227741..228121(-)	internal_stop_codon	227741..227743(-),228140..228142(-),228128..228130(-)		WP_011166664.1	phosphate acyltransferase PlsX	100.0	37.7	43.7
MGA_997	LOCUS_09960	sequence2:228140..228586(-)	internal_stop_codon	228140..228142(-),228128..228130(-)		WP_011183127.1	phosphate acyltransferase PlsX	98.0	45.9	29.6
MGA_998	LOCUS_09970	sequence2:228654..229625(-)	internal_stop_codon	228654..228656(-),229629..229631(-)		WP_001830116.1	fatty acid kinase catalytic subunit FakA	98.5	59.2	38.0
MGA_999	LOCUS_09980	sequence2:229629..230219(-)	internal_stop_codon	229629..229631(-)		WP_004454872.1	DAK2 domain-containing protein	99.5	35.5	46.7
MGA_1001	LOCUS_10000	sequence2:230895..231251(+)	internal_stop_codon	230829..230831(+),231249..231251(+)		WP_000369671.1	lysine--tRNA ligase	100.0	24.6	48.8
MGA_1002	LOCUS_10010	sequence2:231306..232061(+)	internal_stop_codon	231249..231251(+),232059..232061(+)		WP_002894992.1	lysine--tRNA ligase	100.0	51.4	58.4
MGA_1006	LOCUS_10050	sequence2:235213..235704(+)	internal_stop_codon	235180..235182(+)		WP_003131091.1	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	92.6	65.1	37.8
MGA_1007	LOCUS_10060	sequence2:235844..237109(+)	frameshift,internal_stop_codon	237107..237109(+)	237322	WP_010874985.1	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	99.8	83.1	48.3
MGA_1009	LOCUS_10080	sequence2:238248..238400(-)	internal_stop_codon	238410..238412(-)		WP_003041967.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	100.0	6.2	66.0
MGA_1010	LOCUS_10090	sequence2:238410..239657(-)	internal_stop_codon	239793..239795(-),238410..238412(-)		WP_003226808.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	98.8	62.9	55.8
MGA_1011	LOCUS_10100	sequence2:239793..240038(-)	internal_stop_codon	239793..239795(-),240069..240071(-)		WP_011962691.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	100.0	12.5	65.4
MGA_1012	LOCUS_10110	sequence2:240069..240197(-)	internal_stop_codon	239793..239795(-),240069..240071(-)		WP_003855339.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	100.0	6.1	66.7
MGA_1015	LOCUS_10140	sequence2:241276..241815(+)	internal_stop_codon	241102..241104(+),241813..241815(+),241258..241260(+),241144..241146(+)		WP_002222148.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	93.9	44.2	37.9
MGA_1022	LOCUS_10210	sequence2:245640..246131(-)	internal_stop_codon	246189..246191(-)		WP_003565806.1	UMP kinase	98.8	66.9	50.9
MGA_1023	LOCUS_10220	sequence2:246189..246356(-)	internal_stop_codon	246189..246191(-)		WP_012583562.1	UMP kinase	98.2	21.3	48.1
MGA_1026	LOCUS_10250	sequence2:247175..247483(+)	partial			WP_000766420.1	Cof-type HAD-IIB family hydrolase	72.5	25.2	47.3
MGA_1029	LOCUS_10280	sequence2:248474..248614(-)	internal_stop_codon	248474..248476(-),248690..248692(-)		WP_002680838.1	prolyl aminopeptidase	97.8	14.4	57.8
MGA_1030	LOCUS_10290	sequence2:248690..248911(-)	internal_stop_codon	248474..248476(-),248957..248959(-),249131..249133(-),248690..248692(-)		WP_002680838.1	prolyl aminopeptidase	69.9	16.3	51.0
MGA_1031	LOCUS_10300	sequence2:249302..249505(-)	internal_stop_codon	249551..249553(-)		WP_002355965.1	serine--tRNA ligase	89.6	14.2	75.0
MGA_1032	LOCUS_10310	sequence2:249551..250567(-)	internal_stop_codon	249551..249553(-)		WP_011182914.1	serine--tRNA ligase	100.0	80.3	45.3
MGA_1041	LOCUS_10400	sequence2:255593..256135(+)	internal_stop_codon	255533..255535(+)		WP_000411039.1	Xaa-Pro dipeptidase	98.3	49.6	50.6
MGA_1043	LOCUS_10420	sequence2:256781..257200(-)	partial			WP_010874829.1	alpha/beta hydrolase	86.3	44.8	32.3
MGA_1044	LOCUS_10430	sequence2:257485..258195(-)	internal_stop_codon	257485..257487(-)		WP_000897285.1	lipoate--protein ligase	92.4	71.1	45.3
MGA_1049	LOCUS_10480	sequence2:261191..261973(+)	partial			WP_011860947.1	amino acid ABC transporter ATP-binding protein	61.5	70.0	33.7
MGA_1050	LOCUS_10490	sequence2:262101..262583(+)	internal_stop_codon	262095..262097(+),262581..262583(+)		WP_002292815.1	triose-phosphate isomerase	100.0	62.9	45.1
MGA_1062	LOCUS_10610	sequence2:269489..269989(+)	internal_stop_codon	269987..269989(+)		WP_011948032.1	ribonuclease R	95.2	20.8	29.0
MGA_1063	LOCUS_10620	sequence2:270035..271699(+)	internal_stop_codon	269987..269989(+)		WP_003564282.1	ribonuclease R	92.6	65.0	40.5
MGA_1065	LOCUS_10640	sequence2:272717..272941(+)	internal_stop_codon	273020..273022(+),273113..273115(+),272558..272560(+),272714..272716(+),272939..272941(+)		WP_011166223.1	methionine--tRNA ligase	70.3	10.2	59.6
MGA_1066	LOCUS_10650	sequence2:273389..273784(+)	internal_stop_codon	273782..273784(+),273305..273307(+),273365..273367(+),273242..273244(+),273113..273115(+)		WP_001051129.1	methionine--tRNA ligase	100.0	20.1	37.9
MGA_1071	LOCUS_10700	sequence2:276786..277865(-)	internal_stop_codon	277929..277931(-)		WP_011183072.1	pyruvate kinase	99.4	73.8	56.6
MGA_1072	LOCUS_10710	sequence2:277929..278216(-)	internal_stop_codon	277929..277931(-)		WP_011166458.1	pyruvate kinase	95.8	19.0	57.1
MGA_1075	LOCUS_10740	sequence2:279601..280089(-)	internal_stop_codon	280150..280152(-),280117..280119(-)		WP_008765852.1	ribosome biogenesis GTP-binding protein YihA/YsxC	93.2	75.7	43.8
MGA_1078	LOCUS_10770	sequence2:281795..282448(-)	internal_stop_codon	282452..282454(-)		WP_010940288.1	phosphate acetyltransferase	99.5	30.7	46.3
MGA_1081	LOCUS_10800	sequence2:283501..284304(+)	partial			WP_010874862.1	P80 family lipoprotein	63.7	19.2	30.0
MGA_1085	LOCUS_10840	sequence2:287260..287697(+)	internal_stop_codon	287695..287697(+)		WP_010874491.1	ABC transporter ATP-binding protein	69.7	17.2	63.4
MGA_1087	LOCUS_10860	sequence2:288586..288795(+)	internal_stop_codon	288793..288795(+)		WP_011182921.1	ATP-binding cassette domain-containing protein	97.1	8.5	68.7
MGA_1088	LOCUS_10870	sequence2:288862..289350(+)	internal_stop_codon	288793..288795(+)		WP_010874491.1	ABC transporter ATP-binding protein	99.4	27.1	42.2
MGA_1091	LOCUS_10900	sequence2:289964..290338(+)	partial			WP_009968010.1	sugar ABC transporter permease	82.3	33.7	25.5
MGA_1093	LOCUS_10920	sequence2:290814..291110(+)	internal_stop_codon	290781..290783(+),290802..290804(+),291123..291125(+),291108..291110(+),290682..290684(+),291189..291191(+),291318..291320(+)		WP_010874493.1	carbohydrate ABC transporter permease	80.6	25.1	50.0
MGA_1099	LOCUS_10980	sequence2:294888..295757(+)	internal_stop_codon	295755..295757(+)		WP_011166605.1	recombinase RecA	99.3	83.2	60.6
MGA_1100	LOCUS_10990	sequence2:295882..296100(+)	internal_stop_codon	296266..296268(+),296098..296100(+)		WP_010874705.1	TIGR00282 family metallophosphoesterase	98.6	25.3	45.1
MGA_1103	LOCUS_11020	sequence3:4336..4581(+)	internal_stop_codon	4717..4719(+),4114..4116(+),4579..4581(+),4303..4305(+),4732..4734(+)		WP_002381313.1	isoleucine--tRNA ligase	100.0	8.7	43.2
MGA_1104	LOCUS_11030	sequence3:4930..5211(+)	internal_stop_codon	4717..4719(+),5326..5328(+),5371..5373(+),5209..5211(+),5395..5397(+),5251..5253(+),4858..4860(+),4732..4734(+)		WP_002262075.1	isoleucine--tRNA ligase	96.8	9.8	49.5
MGA_1115	LOCUS_11140	sequence3:11471..12109(+)	internal_stop_codon	11456..11458(+),12107..12109(+)		WP_011707803.1	2-hydroxyacid dehydrogenase	93.9	59.3	48.2
MGA_1122	LOCUS_11210	sequence3:16324..17466(+)	internal_stop_codon	17464..17466(+)		WP_011476197.1	excinuclease ABC subunit UvrB	99.2	56.6	54.4
MGA_1123	LOCUS_11220	sequence3:17575..18321(+)	internal_stop_codon	17464..17466(+)		WP_164919771.1	excinuclease ABC subunit UvrB	100.0	36.4	47.6
MGA_1125	LOCUS_11240	sequence3:18932..19807(+)	internal_stop_codon	19805..19807(+),19895..19897(+),19829..19831(+)		WP_010990003.1	excinuclease ABC subunit UvrA	99.0	30.0	53.5
MGA_1126	LOCUS_11250	sequence3:20141..20734(+)	internal_stop_codon	20126..20128(+),20732..20734(+)		WP_011476196.1	excinuclease ABC subunit UvrA	100.0	20.7	61.4
MGA_1127	LOCUS_11260	sequence3:21116..21775(+)	partial			WP_003436266.1	excinuclease ABC subunit UvrA	98.2	22.8	69.8
MGA_1129	LOCUS_11280	sequence3:22111..22755(+)	partial			WP_010964404.1	HPr(Ser) kinase/phosphatase	89.7	64.8	40.7
MGA_1131	LOCUS_11300	sequence3:23764..23916(+)	internal_stop_codon	23914..23916(+),23941..23943(+)		WP_002262096.1	thioredoxin-disulfide reductase	92.0	15.1	69.6
MGA_1132	LOCUS_11310	sequence3:23977..24696(+)	internal_stop_codon	23914..23916(+),23941..23943(+)		WP_000272302.1	thioredoxin-disulfide reductase	94.6	73.9	38.3
MGA_1133	LOCUS_11320	sequence3:24795..25154(-)	partial			WP_003721565.1	MIP/aquaporin family protein	51.3	23.5	55.7
MGA_1135	LOCUS_11340	sequence3:25778..25957(-)	internal_stop_codon	25778..25780(-),26072..26074(-),26201..26203(-),25682..25684(-)		WP_010874407.1	glycerol kinase GlpK	72.9	8.5	58.1
MGA_1136	LOCUS_11350	sequence3:26273..26440(-)	internal_stop_codon	26462..26464(-),26201..26203(-),26729..26731(-),26561..26563(-),26072..26074(-),26654..26656(-),26645..26647(-),26273..26275(-)		WP_013099318.1	glycerol kinase GlpK	100.0	11.0	76.4
MGA_1137	LOCUS_11360	sequence3:27020..27151(-)	internal_stop_codon	26993..26995(-),26843..26845(-),27020..27022(-),26729..26731(-),26885..26887(-)		WP_011705539.1	glycerol kinase GlpK	93.0	8.0	70.0
MGA_1138	LOCUS_11370	sequence3:27196..27738(-)	internal_stop_codon	27802..27804(-)		WP_013447578.1	type 2 glycerol-3-phosphate oxidase	96.1	45.5	54.0
MGA_1139	LOCUS_11380	sequence3:27802..28050(-)	internal_stop_codon	28132..28134(-),27802..27804(-),28120..28122(-)		WP_013447578.1	type 2 glycerol-3-phosphate oxidase	98.8	20.9	51.9
MGA_1140	LOCUS_11390	sequence3:28132..28350(-)	internal_stop_codon	28132..28134(-),28120..28122(-)		WP_013447578.1	type 2 glycerol-3-phosphate oxidase	97.2	18.1	54.3
MGA_1144	LOCUS_11430	sequence3:30273..30515(+)	internal_stop_codon	30717..30719(+),30513..30515(+)		WP_000361264.1	(d)CMP kinase	93.8	33.3	38.7
MGA_1146	LOCUS_11450	sequence3:30768..30962(+)	internal_stop_codon	30717..30719(+)		WP_000644391.1	(d)CMP kinase	85.9	25.1	47.3
MGA_1147	LOCUS_11460	sequence3:30955..31095(+)	internal_stop_codon	31342..31344(+),31093..31095(+)		WP_003598629.1	ribosome biogenesis GTPase Der	89.1	9.4	70.7
MGA_1149	LOCUS_11480	sequence3:31375..31830(+)	internal_stop_codon	31342..31344(+),31906..31908(+),31828..31830(+)		WP_011016201.1	ribosome biogenesis GTPase Der	100.0	34.5	47.1
MGA_1150	LOCUS_11490	sequence3:32044..32262(+)	internal_stop_codon	31828..31830(+),31906..31908(+)		WP_011183096.1	ribosome biogenesis GTPase Der	95.8	15.9	49.3
MGA_1152	LOCUS_11510	sequence3:32898..33296(-)	internal_stop_codon	33582..33584(-),33513..33515(-)		WP_012027384.1	phosphopentomutase	95.5	30.8	45.2
MGA_1153	LOCUS_11520	sequence3:33582..33812(-)	internal_stop_codon	33819..33821(-),33513..33515(-),33942..33944(-),33582..33584(-)		WP_001046079.1	phosphopentomutase	100.0	18.8	64.5
MGA_1157	LOCUS_11560	sequence3:36198..36704(+)	internal_stop_codon	36990..36992(+),36702..36704(+),36903..36905(+),36714..36716(+),36765..36767(+)		WP_011922558.1	tyrosine--tRNA ligase	97.6	41.6	50.0
MGA_1160	LOCUS_11590	sequence3:38843..39034(-)	internal_stop_codon	39089..39091(-)		WP_002295135.1	phosphoglycerate kinase	96.8	15.4	62.3
MGA_1161	LOCUS_11600	sequence3:39089..39376(-)	internal_stop_codon	39089..39091(-),39620..39622(-)		WP_002295135.1	phosphoglycerate kinase	100.0	24.2	53.1
MGA_1162	LOCUS_11610	sequence3:39620..40033(-)	internal_stop_codon	39620..39622(-)		WP_001096743.1	phosphoglycerate kinase	97.8	33.7	61.9
MGA_1163	LOCUS_11620	sequence3:40404..40688(+)	internal_stop_codon	40686..40688(+)		WP_011183486.1	nicotinate phosphoribosyltransferase	87.2	23.6	50.6
MGA_1164	LOCUS_11630	sequence3:40695..41063(+)	internal_stop_codon	41085..41087(+),41061..41063(+),40686..40688(+)		WP_000658370.1	nicotinate phosphoribosyltransferase	100.0	32.8	49.2
MGA_1165	LOCUS_11640	sequence3:41115..41435(+)	internal_stop_codon	41085..41087(+),41061..41063(+)		WP_011183486.1	nicotinate phosphoribosyltransferase	74.5	22.5	57.0
MGA_1171	LOCUS_11700	sequence3:45123..45425(-)	internal_stop_codon	45459..45461(-)		WP_003733786.1	TrkH family potassium uptake protein	72.0	17.8	43.0
MGA_1172	LOCUS_11710	sequence3:45459..45758(-)	internal_stop_codon	45459..45461(-)		WP_001204707.1	TrkH family potassium uptake protein	76.8	16.9	46.1
MGA_1175	LOCUS_11740	sequence3:47373..48083(-)	internal_stop_codon	48174..48176(-)		WP_002456664.1	M42 family metallopeptidase	99.6	66.2	33.8
MGA_1176	LOCUS_11750	sequence3:48174..48455(-)	internal_stop_codon	48174..48176(-)		WP_001024576.1	M42 family metallopeptidase	100.0	26.0	39.8
MGA_1183	LOCUS_11820	sequence3:52122..52616(+)	internal_stop_codon	52614..52616(+)		WP_011166475.1	30S ribosomal protein S4	98.8	78.8	58.5
MGA_1186	LOCUS_11850	sequence3:53553..53942(-)	internal_stop_codon	53553..53555(-),54021..54023(-)		WP_010964145.1	class II fructose-1,6-bisphosphate aldolase	99.2	44.3	67.2
MGA_1187	LOCUS_11860	sequence3:54622..55107(+)	internal_stop_codon	55105..55107(+),55165..55167(+),55315..55317(+)		WP_011182984.1	cysteine--tRNA ligase	88.2	32.0	43.7
MGA_1188	LOCUS_11870	sequence3:55330..55779(+)	internal_stop_codon	55105..55107(+),55165..55167(+),55315..55317(+),55777..55779(+)		WP_011182984.1	cysteine--tRNA ligase	93.3	30.6	31.4
MGA_1189	LOCUS_11880	sequence3:55857..56330(+)	internal_stop_codon	56328..56330(+)		WP_012583826.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	98.7	69.0	35.2
MGA_1190	LOCUS_11890	sequence3:56376..56561(+)	internal_stop_codon	56328..56330(+)		WP_010881080.1	tRNA (guanosine(18)-2'-O)-methyltransferase TrmH	86.9	25.1	49.1
MGA_1210	LOCUS_12090	sequence3:66228..66641(+)	internal_stop_codon	66018..66020(+),66837..66839(+),66024..66026(+),66639..66641(+),66840..66842(+),66159..66161(+),66834..66836(+),66783..66785(+)		WP_020862982.1	PTS transporter subunit EIIC	53.3	9.8	53.4
MGA_1211	LOCUS_12100	sequence3:66909..67736(+)	partial			WP_000795063.1	PTS transporter subunit IIBC	98.2	35.6	36.2
MGA_1212	LOCUS_12110	sequence3:68204..68365(+)	internal_stop_codon	68363..68365(+)		WP_008363445.1	ATP-binding protein	98.1	15.1	59.6
MGA_1213	LOCUS_12120	sequence3:68462..69247(+)	internal_stop_codon	68363..68365(+)		WP_008363445.1	ATP-binding protein	98.5	74.5	57.6
MGA_1216	LOCUS_12150	sequence3:69942..70121(+)	internal_stop_codon	70119..70121(+),70359..70361(+)		WP_011167180.1	S8 family peptidase	96.6	7.6	46.6
MGA_1217	LOCUS_12160	sequence3:70137..70361(+)	internal_stop_codon	70119..70121(+),70359..70361(+)		WP_011167180.1	S8 family peptidase	98.6	9.8	65.8
MGA_1218	LOCUS_12170	sequence3:70503..70721(+)	internal_stop_codon	70359..70361(+),70719..70721(+),70809..70811(+)		WP_011167180.1	S8 family peptidase	100.0	9.7	61.1
MGA_1219	LOCUS_12180	sequence3:70854..71213(+)	internal_stop_codon	70719..70721(+),70809..70811(+),71211..71213(+),71436..71438(+)		WP_011167180.1	S8 family peptidase	100.0	15.3	49.2
MGA_1222	LOCUS_12210	sequence3:72336..72662(+)	internal_stop_codon	72252..72254(+)		WP_011058246.1	replicative DNA helicase	91.7	21.8	46.1
