{
    "type": "genome",
    "identifier": "GCF_000701485.1",
    "organism": "Mycoplasmopsis sturni DSM 22021",
    "title": "Mycoplasmopsis sturni DSM 22021",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000701485.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02841182",
        "wgs_master": "JNIZ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1122249",
        "species_taxid": "39047",
        "organism_name": "Mycoplasmopsis sturni DSM 22021",
        "infraspecific_name": "strain=DSM 22021",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/06/11",
        "asm_name": "ASM70148v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000701485.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/701/485/GCF_000701485.1_ASM70148v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "813344",
        "genome_size_ungapped": "813284",
        "gc_percent": "29.000000",
        "replicon_count": "0",
        "scaffold_count": "4",
        "contig_count": "5",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000701485.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "660",
        "protein_coding_gene_count": "616",
        "non_coding_gene_count": "43",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-06-11",
    "dateModified": "2014-06-11",
    "datePublished": "2014-06-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mycoplasmopsis sturni DSM 22021"
        ],
        "sample_taxid": [
            "1122249"
        ],
        "sample_host_organism": [
            "Sturnus vulgaris"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.222 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "813344",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "425216",
        "N50 (bp)": "425216",
        "Gap Ratio (%)": "0.007377",
        "GCcontent (%)": "29.0",
        "Number of CDSs": "1245",
        "Average Protein Length": "139.9",
        "Coding Ratio (%)": "64.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Mycoplasmopsis sturni",
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                "relation_to_type": "type",
                "validated": true,
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            },
            {
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                "taxid": 171282,
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 87,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycoplasmopsis columboralis",
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                "accession": "GCA_000701845.1",
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                "status": "below_threshold"
            },
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                "organism_name": "Mycoplasmopsis gallopavonis",
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                "species_taxid": 76629,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycoplasmopsis citelli",
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                "species_taxid": 171281,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5916,
                "matched_fragments": 82,
                "total_fragments": 270,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycoplasmopsis gallopavonis",
                "strain": "strain=WR1",
                "accession": "GCA_003583385.1",
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                "species_taxid": 76629,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2778,
                "matched_fragments": 52,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Mycoplasmopsis cricetuli",
                "strain": "strain=ATCC 35279",
                "accession": "GCA_000526955.1",
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                "species_taxid": 171283,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.225,
                "matched_fragments": 75,
                "total_fragments": 270,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_000701485.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Mycoplasmopsis_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
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            {
                "accession": "GCF_900660675.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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            },
            {
                "accession": "GCF_900660605.1",
                "gtdb_species": "s__Mycoplasmopsis_A glycophilum",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000733865.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "genome_size": null,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Mycoplasmopsis",
        "sturni",
        "DSM",
        "22021"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}