{
    "type": "genome",
    "identifier": "GCF_000701845.1",
    "organism": "Mycoplasmopsis columboralis ATCC 29258",
    "title": "Mycoplasmopsis columboralis ATCC 29258",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000701845.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02841178",
        "wgs_master": "JNJZ00000000.1",
        "refseq_category": "na",
        "taxid": "1408458",
        "species_taxid": "171282",
        "organism_name": "Mycoplasmopsis columboralis ATCC 29258",
        "infraspecific_name": "strain=ATCC 29258",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/06/11",
        "asm_name": "ASM70184v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000701845.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/701/845/GCF_000701845.1_ASM70184v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "910711",
        "genome_size_ungapped": "908611",
        "gc_percent": "29.000000",
        "replicon_count": "0",
        "scaffold_count": "29",
        "contig_count": "30",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-28",
        "total_gene_count": "767",
        "protein_coding_gene_count": "713",
        "non_coding_gene_count": "43",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-06-11",
    "dateModified": "2014-06-11",
    "datePublished": "2014-06-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mycoplasmopsis columboralis ATCC 29258"
        ],
        "sample_taxid": [
            "1408458"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.249 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "910711",
        "Number of Sequences": "29",
        "Longest Sequences (bp)": "186317",
        "N50 (bp)": "94760",
        "Gap Ratio (%)": "0.230589",
        "GCcontent (%)": "29.2",
        "Number of CDSs": "1387",
        "Average Protein Length": "150.3",
        "Coding Ratio (%)": "68.7",
        "Number of rRNAs": "4",
        "Number of tRNAs": "29",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Mycoplasmopsis columboralis",
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                "accession": "GCA_000701845.1",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mycoplasmopsis columboralis",
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                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
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                "relation_to_type": "type",
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                "status": "below_threshold"
            },
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                "status": "below_threshold"
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            {
                "organism_name": "Mycoplasmopsis sturni",
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                "species_taxid": 39047,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 80,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycoplasmopsis gallopavonis",
                "strain": "strain=NCTC10186",
                "accession": "GCA_900660635.1",
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                "species_taxid": 76629,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8978,
                "matched_fragments": 59,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycoplasmopsis cricetuli",
                "strain": "strain=ATCC 35279",
                "accession": "GCA_000526955.1",
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                "species_taxid": 171283,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1477,
                "matched_fragments": 93,
                "total_fragments": 288,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_900660675.1",
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                "total_fragments": 288,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Mycoplasmopsis_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_900660645.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900660495.1",
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                "mean_intra_species_ani": "96.30",
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            },
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                "accession": "GCF_000733865.1",
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            },
            {
                "accession": "GCF_900167035.1",
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                "matched_fragments": 52,
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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    },
    "_genome_taxon": [
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        "columboralis",
        "ATCC",
        "29258"
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}