{
    "type": "genome",
    "identifier": "GCF_000702785.1",
    "organism": "Mycoplasmopsis primatum ATCC 25948",
    "title": "Mycoplasmopsis primatum ATCC 25948",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000702785.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02841175",
        "wgs_master": "JNJV00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1408468",
        "species_taxid": "55604",
        "organism_name": "Mycoplasmopsis primatum ATCC 25948",
        "infraspecific_name": "strain=ATCC 25948",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/06/11",
        "asm_name": "ASM70278v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000702785.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/702/785/GCF_000702785.1_ASM70278v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "902769",
        "genome_size_ungapped": "902769",
        "gc_percent": "27.500000",
        "replicon_count": "0",
        "scaffold_count": "63",
        "contig_count": "63",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000702785.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "815",
        "protein_coding_gene_count": "759",
        "non_coding_gene_count": "40",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-06-11",
    "dateModified": "2014-06-11",
    "datePublished": "2014-06-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mycoplasmopsis primatum ATCC 25948"
        ],
        "sample_taxid": [
            "1408468"
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        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.247 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "902769",
        "Number of Sequences": "63",
        "Longest Sequences (bp)": "65926",
        "N50 (bp)": "26072",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "27.6",
        "Number of CDSs": "1421",
        "Average Protein Length": "138.9",
        "Coding Ratio (%)": "65.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Mycoplasmopsis primatum",
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                "accession": "GCA_000702785.1",
                "taxid": 55604,
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 268,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mycoplasma tauri",
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                "taxid": 547987,
                "species_taxid": 547987,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 87,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_000063605.1",
                "taxid": 2110,
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                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Mycoplasmopsis felifaucium",
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                "taxid": 35768,
                "species_taxid": 35768,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "strain_heterogeneity": 0.0
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                "accession": "GCF_000702785.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Mycoplasmopsis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 5,
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            },
            {
                "accession": "GCF_005061465.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000183385.1",
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                "mean_intra_species_ani": "97.97",
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                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 193,
                "status": "-"
            },
            {
                "accession": "GCF_000266865.1",
                "gtdb_species": "s__Mycoplasmopsis agalactiae_A",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000687775.1",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": null,
        "sporulation": null,
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        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Mycoplasmopsis",
        "primatum",
        "ATCC",
        "25948"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}