{ "type": "genome", "identifier": "GCF_000705355.1", "organism": "Pseudorhizobium marinum", "title": "Pseudorhizobium marinum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "85303", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000705355.1", "bioproject": "PRJNA224116", "biosample": "SAMN02743500", "wgs_master": "JMQK00000000.1", "refseq_category": "reference genome", "taxid": "1496690", "species_taxid": "1496690", "organism_name": "Pseudorhizobium marinum", "infraspecific_name": "strain=MGL06", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/06/12", "asm_name": "SOAPdenovo for version 1.05 of Rhizobium marinus MGL06", "asm_submitter": "85303", "gbrs_paired_asm": "GCA_000705355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/705/355/GCF_000705355.1_SOAPdenovo_for_version_1.05_of_Rhizobium_marinus_MGL06", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5061979", "genome_size_ungapped": "5061979", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "87", "contig_count": "87", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000705355.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "5008", "protein_coding_gene_count": "4855", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-06-12", "dateModified": "2014-06-12", "datePublished": "2014-06-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudorhizobium marinum" ], "sample_taxid": [ "1496690" ], 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1191678, "species_taxid": 1191678, "relation_to_type": "type", "validated": true, "ani": 81.7622, "matched_fragments": 920, "total_fragments": 1650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhizobium flavum", "strain": "strain=DSM 102134", "accession": "GCA_014201495.1", "taxid": 1335061, "species_taxid": 1335061, "relation_to_type": "type", "validated": true, "ani": 81.3171, "matched_fragments": 858, "total_fragments": 1650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhizobium halotolerans", "strain": "strain=AB21", "accession": "GCA_902153235.3", "taxid": 1233081, "species_taxid": 1233081, "relation_to_type": "type", "validated": true, "ani": 81.3082, "matched_fragments": 887, "total_fragments": 1650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhizobium banfieldiae", "strain": "strain=NT-26", "accession": "GCA_000967425.1", "taxid": 1125847, "species_taxid": 1125847, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium alkalisoli", "strain": "strain=DSM 21826", "accession": "GCA_002968635.1", "taxid": 528178, "species_taxid": 528178, "relation_to_type": "type", "validated": true, "ani": 79.9573, "matched_fragments": 753, "total_fragments": 1650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella granuli", "strain": "strain=DSM 18401", "accession": "GCA_004341885.1", "taxid": 323621, "species_taxid": 323621, "relation_to_type": "type", "validated": true, "ani": 79.9354, "matched_fragments": 715, "total_fragments": 1650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella yambaruensis", "strain": "strain=DSM 18801", "accession": "GCA_022899355.1", "taxid": 415996, "species_taxid": 415996, "relation_to_type": "type", "validated": true, "ani": 79.9091, "matched_fragments": 705, "total_fragments": 1650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium rosettiformans", "strain": "strain=DSM 26376", "accession": "GCA_014202175.1", "taxid": 1368430, "species_taxid": 1368430, "relation_to_type": "type", "validated": true, "ani": 79.8185, "matched_fragments": 641, "total_fragments": 1650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella sumterensis", "strain": "strain=MEC087", "accession": "GCA_004514425.2", "taxid": 1967501, "species_taxid": 1967501, "relation_to_type": "type", "validated": true, "ani": 79.7443, "matched_fragments": 618, "total_fragments": 1650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella oryzae", "strain": "strain=Z-25", "accession": "GCA_023038235.1", "taxid": 2871820, "species_taxid": 2871820, "relation_to_type": "type", "validated": true, "ani": 79.6466, "matched_fragments": 641, "total_fragments": 1650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium huautlense", "strain": "strain=DSM 21817", "accession": "GCA_002968575.1", "taxid": 67774, "species_taxid": 67774, "relation_to_type": "type", "validated": true, "ani": 79.6464, "matched_fragments": 719, "total_fragments": 1650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter ferrooxidans", "strain": "strain=F8825", "accession": "GCA_004137355.1", "taxid": 2509717, "species_taxid": 2509717, "relation_to_type": "type", "validated": true, "ani": 79.6396, "matched_fragments": 620, "total_fragments": 1650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium leguminum", "strain": "strain=MOPV5", "accession": "GCA_015704895.1", "taxid": 2792015, "species_taxid": 2792015, "relation_to_type": "type", "validated": true, "ani": 79.0625, "matched_fragments": 575, "total_fragments": 1650, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { 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