{ "type": "genome", "identifier": "GCF_000708045.1", "organism": "Marinobacter nitratireducens", "title": "Marinobacter nitratireducens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbial Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000708045.1", "bioproject": "PRJNA224116", "biosample": "SAMN02854799", "wgs_master": "ANIE00000000.1", "refseq_category": "reference genome", "taxid": "1137280", "species_taxid": "1137280", "organism_name": "Marinobacter nitratireducens", "infraspecific_name": "strain=AK21", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/06/13", "asm_name": "Marinobacter sp. AK21", "asm_submitter": "Institute of Microbial Technology", "gbrs_paired_asm": "GCA_000708045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/708/045/GCF_000708045.1_Marinobacter_sp._AK21", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3890033", "genome_size_ungapped": "3890033", "gc_percent": "56.500000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000708045.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "3545", "protein_coding_gene_count": "3481", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-06-13", "dateModified": "2014-06-13", "datePublished": "2014-06-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter nitratireducens" ], "sample_taxid": [ "1137280" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.106 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3890033", "Number of Sequences": "22", "Longest Sequences (bp)": "969006", "N50 (bp)": "552815", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.7", "Number of CDSs": "3499", "Average Protein Length": "339.5", "Coding Ratio (%)": "91.6", "Number of rRNAs": "2", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter nitratireducens", "strain": "strain=AK21", "accession": "GCA_000708045.1", "taxid": 1137280, "species_taxid": 1137280, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1285, "total_fragments": 1287, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter salinexigens", "strain": "strain=ZYF650", "accession": "GCA_008370345.1", "taxid": 2919747, "species_taxid": 2919747, "relation_to_type": "type", "validated": true, "ani": 81.6203, "matched_fragments": 780, "total_fragments": 1287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 80.0835, "matched_fragments": 574, "total_fragments": 1287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter arenosus", "strain": "strain=CAU 1620", "accession": "GCA_019264345.1", "taxid": 2856822, "species_taxid": 2856822, "relation_to_type": "type", "validated": true, "ani": 79.874, "matched_fragments": 606, "total_fragments": 1287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter gudaonensis", "strain": "strain=CGMCC 1.6294", "accession": "GCA_900115175.1", "taxid": 375760, "species_taxid": 375760, "relation_to_type": "type", "validated": true, "ani": 79.8394, "matched_fragments": 555, "total_fragments": 1287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter santoriniensis", "strain": "strain=NKSG1", "accession": "GCA_000347775.1", "taxid": 523742, "species_taxid": 523742, "relation_to_type": "type", "validated": true, "ani": 79.7307, "matched_fragments": 501, "total_fragments": 1287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter flavimaris", "strain": "strain=KCTC 12185", "accession": "GCA_003363485.1", "taxid": 262076, "species_taxid": 262076, "relation_to_type": "type", "validated": true, "ani": 79.6936, "matched_fragments": 587, "total_fragments": 1287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter flavimaris", "strain": "strain=LMG 23834", "accession": "GCA_002933295.1", "taxid": 262076, "species_taxid": 262076, "relation_to_type": "type", "validated": true, "ani": 79.6822, "matched_fragments": 581, "total_fragments": 1287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter vinifirmus", "strain": "strain=FB1", "accession": "GCA_002258215.1", "taxid": 355591, "species_taxid": 355591, "relation_to_type": "type", "validated": true, "ani": 79.5701, "matched_fragments": 499, "total_fragments": 1287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter nauticus", "strain": "strain=DSM 50418", "accession": "GCA_003634635.1", "taxid": 2743, "species_taxid": 2743, "relation_to_type": "type", "validated": true, "ani": 79.5515, "matched_fragments": 497, "total_fragments": 1287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter koreensis", "strain": "strain=DSM 17924", "accession": "GCA_023156285.1", "taxid": 335974, "species_taxid": 335974, "relation_to_type": "type", "validated": true, "ani": 79.497, "matched_fragments": 527, "total_fragments": 1287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 79.493, "matched_fragments": 567, "total_fragments": 1287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 79.0332, "matched_fragments": 464, "total_fragments": 1287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=IBRC-M 10445", "accession": "GCA_900114155.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 79.0098, "matched_fragments": 366, "total_fragments": 1287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter bryozoorum", "strain": "strain=DSM 15401", "accession": "GCA_023156245.1", "taxid": 256324, "species_taxid": 256324, "relation_to_type": "type", "validated": true, "ani": 78.7084, "matched_fragments": 299, "total_fragments": 1287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter fuscus", "strain": "strain=NH169-3", "accession": "GCA_003007675.1", "taxid": 2109942, "species_taxid": 2109942, "relation_to_type": "type", "validated": true, "ani": 78.6638, "matched_fragments": 419, "total_fragments": 1287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter zhejiangensis", "strain": "strain=CGMCC 1.7061", "accession": "GCA_900114775.1", "taxid": 488535, "species_taxid": 488535, "relation_to_type": "type", "validated": true, "ani": 78.3714, "matched_fragments": 364, "total_fragments": 1287, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000708045.1", "gtdb_species": "s__Marinobacter nitratireducens", "ani": 100.0, "matched_fragments": 1285, "total_fragments": 1287, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.83", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_008370345.1", 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"gc_content": 56.7, "coding_genes": 3548.15, "rRNA16S_genes": 2.444, "tRNA_genes": 48.833, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.96, "range_salinity": 1.0, "facultative_respiration": 0.137, "anaerobic_respiration": 0.034, "aerobic_respiration": 0.827, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.958, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.041, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Marinobacter", "nitratireducens" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }