{ "type": "genome", "identifier": "GCF_000708615.2", "organism": "Chryseobacterium hispalense DSM 25574", "title": "Chryseobacterium hispalense DSM 25574", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Lycoming College", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000708615.2", "bioproject": "PRJNA224116", "biosample": "SAMN02595408", "wgs_master": "JARQ00000000.1", "refseq_category": "reference genome", "taxid": "491205", "species_taxid": "1453492", "organism_name": "Chryseobacterium hispalense DSM 25574", "infraspecific_name": "strain=DSM 25574", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Minor", "genome_rep": "Full", "seq_rel_date": "2014/06/16", "asm_name": "Chryseo hispalense genome", "asm_submitter": "Lycoming College", "gbrs_paired_asm": "GCA_000708615.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/708/615/GCF_000708615.2_Chryseo_hispalense_genome", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4363762", "genome_size_ungapped": "4363762", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000708615.2-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3960", "protein_coding_gene_count": "3870", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-06-16", "dateModified": "2014-06-16", "datePublished": "2014-06-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium hispalense DSM 25574" ], "sample_taxid": [ "491205" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "1.223 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4363762", "Number of Sequences": "27", "Longest Sequences (bp)": "875329", "N50 (bp)": "416561", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.7", "Number of CDSs": "3843", "Average Protein Length": "328.0", "Coding Ratio (%)": "86.7", "Number of rRNAs": "3", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium hispalense", "strain": "strain=DSM 25574", "accession": "GCA_000708615.2", "taxid": 1453492, 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"relation_to_type": "type", "validated": true, "ani": 83.4743, "matched_fragments": 957, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gambrini", "strain": "strain=DSM 18014", "accession": "GCA_900156825.1", "taxid": 373672, "species_taxid": 373672, "relation_to_type": "type", "validated": true, "ani": 83.0199, "matched_fragments": 902, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium taeanense", "strain": "strain=DSM 17071", "accession": "GCA_900099685.1", "taxid": 311334, "species_taxid": 311334, "relation_to_type": "type", "validated": true, "ani": 83.0036, "matched_fragments": 885, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium mucoviscidosis", "strain": "strain=VT16-26", "accession": "GCA_002177115.1", "taxid": 1945581, "species_taxid": 1945581, "relation_to_type": "type", 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"matched_fragments": 743, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 79.35, "matched_fragments": 608, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 79.1766, "matched_fragments": 477, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000708615.2", "gtdb_species": "s__Chryseobacterium hispalense", "ani": 100.0, "matched_fragments": 1441, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Chryseobacterium", "hispalense", "DSM", "25574" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }