{ "type": "genome", "identifier": "GCF_000709085.1", "organism": "Virgibacillus alimentarius", "title": "Virgibacillus alimentarius", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000709085.1", "bioproject": "PRJNA224116", "biosample": "SAMN02647401", "wgs_master": "JFBD00000000.1", "refseq_category": "na", "taxid": "698769", "species_taxid": "698769", "organism_name": "Virgibacillus alimentarius", "infraspecific_name": "strain=J18", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/06/16", "asm_name": "Virgibacillus alimentarius J18", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_000709085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/085/GCF_000709085.1_Virgibacillus_alimentarius_J18", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3045860", "genome_size_ungapped": "3045860", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "146", "contig_count": "146", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000709085.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "3159", "protein_coding_gene_count": "2977", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-06-16", "dateModified": "2014-06-16", "datePublished": "2014-06-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Virgibacillus alimentarius" ], "sample_taxid": [ "698769" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Goheung" ], "sample_host_location_id": [], "data_size": "0.869 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3045860", "Number of Sequences": "146", "Longest Sequences (bp)": "110831", "N50 (bp)": "36623", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.1", "Number of CDSs": "3072", "Average Protein Length": "275.9", "Coding Ratio (%)": "83.5", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Virgibacillus alimentarius", "strain": "strain=J18", "accession": "GCA_000709085.1", "taxid": 698769, "species_taxid": 698769, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 933, "total_fragments": 943, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Ornithinibacillus contaminans", "strain": "strain=DSM 22953", "accession": "GCA_001038425.2", "taxid": 694055, "species_taxid": 694055, "relation_to_type": "type", "validated": true, "ani": 77.1948, "matched_fragments": 92, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus indicus", "strain": "strain=P2-C2", "accession": "GCA_002266285.1", "taxid": 2024554, "species_taxid": 2024554, "relation_to_type": "type", "validated": true, "ani": 77.116, "matched_fragments": 130, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus chungangensis", "strain": "strain=CAU 1051", "accession": "GCA_003369565.1", "taxid": 1229152, "species_taxid": 1229152, "relation_to_type": "type", "validated": true, "ani": 76.9672, "matched_fragments": 84, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinibacillus gellani", "strain": "strain=LJ137", "accession": "GCA_003730295.1", "taxid": 2293253, "species_taxid": 2293253, "relation_to_type": "type", "validated": true, "ani": 76.8443, "matched_fragments": 87, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinibacillus halophilus", "strain": "strain=IBRC-M 10683", "accession": "GCA_900129485.1", "taxid": 930117, "species_taxid": 930117, "relation_to_type": "type", "validated": true, "ani": 76.7891, "matched_fragments": 106, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus massiliensis", "strain": "strain=Vm-5", "accession": "GCA_000723585.1", "taxid": 1462526, "species_taxid": 1462526, "relation_to_type": "suspected-type", "validated": true, "ani": 76.786, "matched_fragments": 116, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Radiobacillus deserti", "strain": "strain=TKL69", "accession": "GCA_007301515.1", "taxid": 2594883, "species_taxid": 2594883, "relation_to_type": "type", "validated": true, "ani": 76.7452, "matched_fragments": 50, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cerasibacillus terrae", "strain": "strain=CC-CFT480", "accession": "GCA_008039555.1", "taxid": 2498845, "species_taxid": 2498845, "relation_to_type": "type", "validated": true, "ani": 76.694, "matched_fragments": 108, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentibacillus halodurans", "strain": "strain=CGMCC 1.3702", "accession": "GCA_900112045.1", "taxid": 237679, "species_taxid": 237679, "relation_to_type": "type", "validated": true, "ani": 76.6687, "matched_fragments": 75, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus massiliensis", "strain": "strain=Vm-5", "accession": "GCA_014905475.1", "taxid": 1462526, "species_taxid": 1462526, "relation_to_type": "suspected-type", "validated": true, "ani": 76.6447, "matched_fragments": 119, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentibacillus amyloliquefaciens", "strain": "strain=LAM0015", "accession": "GCA_001307805.2", "taxid": 1472767, "species_taxid": 1472767, "relation_to_type": "type", "validated": true, "ani": 76.6337, "matched_fragments": 82, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus litoralis", "strain": "strain=DSM 21085", "accession": "GCA_017873675.1", "taxid": 578221, "species_taxid": 578221, "relation_to_type": "type", "validated": true, "ani": 76.6304, "matched_fragments": 125, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus senegalensis", "strain": "strain=Marseille-P3587", "accession": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Virgibacillus", "alimentarius" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }