{ "type": "genome", "identifier": "GCF_000711795.1", "organism": "Vibrio pacinii DSM 19139", "title": "Vibrio pacinii DSM 19139", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000711795.1", "bioproject": "PRJNA224116", "biosample": "SAMN02745241", "wgs_master": "JONH00000000.1", "refseq_category": "reference genome", "taxid": "1123494", "species_taxid": "170674", "organism_name": "Vibrio pacinii DSM 19139", "infraspecific_name": "strain=DSM 19139", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/06/25", "asm_name": "ASM71179v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000711795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/711/795/GCF_000711795.1_ASM71179v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4304676", "genome_size_ungapped": "4297946", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "53", "contig_count": "59", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000711795.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "3926", "protein_coding_gene_count": "3815", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-06-25", "dateModified": "2014-06-25", "datePublished": "2014-06-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio pacinii DSM 19139" ], "sample_taxid": [ "1123494" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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}, { "organism_name": "Vibrio aquaticus", "strain": "strain=BEI207", "accession": "GCA_003970385.1", "taxid": 2496559, "species_taxid": 2496559, "relation_to_type": "type", "validated": true, "ani": 80.9197, "matched_fragments": 593, "total_fragments": 1407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tubiashii", "strain": "strain=ATCC 19109", "accession": "GCA_000222665.2", "taxid": 29498, "species_taxid": 29498, "relation_to_type": "suspected-type", "validated": true, "ani": 80.8583, "matched_fragments": 645, "total_fragments": 1407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nereis", "strain": "strain=NBRC 15637", "accession": "GCA_001591105.1", "taxid": 693, "species_taxid": 693, "relation_to_type": "type", "validated": true, "ani": 80.1803, "matched_fragments": 488, "total_fragments": 1407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nereis", "strain": "strain=DSM 19584", "accession": "GCA_001274805.1", "taxid": 693, "species_taxid": 693, "relation_to_type": "type", "validated": true, "ani": 80.1088, "matched_fragments": 492, "total_fragments": 1407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio alginolyticus", "strain": "strain=NCTC12160", "accession": "GCA_900460285.1", "taxid": 663, "species_taxid": 663, "relation_to_type": "type", "validated": true, "ani": 79.7759, "matched_fragments": 401, "total_fragments": 1407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio antiquarius", "strain": "strain=EX25", "accession": "GCA_000024825.1", "taxid": 150340, "species_taxid": 150340, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6631, "matched_fragments": 410, "total_fragments": 1407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio campbellii", "strain": "strain=CAIM 519", "accession": "GCA_000334195.1", "taxid": 680, "species_taxid": 680, 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"below_threshold" }, { "organism_name": "Vibrio antiquarius", "strain": "strain=EX25", "accession": "GCA_000152485.1", "taxid": 150340, "species_taxid": 150340, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0519, "matched_fragments": 355, "total_fragments": 1407, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000711795.1", "gtdb_species": "s__Vibrio pacinii", "ani": 100.0, "matched_fragments": 1404, "total_fragments": 1407, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.5386, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002811245.1", "gtdb_species": "s__Vibrio salilacus", 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