{
    "type": "genome",
    "identifier": "GCF_000712295.1",
    "organism": "Synergistes jonesii",
    "title": "Synergistes jonesii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UC Davis",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000712295.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02737376",
        "wgs_master": "JMKI00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2754",
        "species_taxid": "2754",
        "organism_name": "Synergistes jonesii",
        "infraspecific_name": "strain=78-1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/06/25",
        "asm_name": "sjonesii4.0",
        "asm_submitter": "UC Davis",
        "gbrs_paired_asm": "GCA_000712295.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/712/295/GCF_000712295.1_sjonesii4.0",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2741240",
        "genome_size_ungapped": "2741240",
        "gc_percent": "56.500000",
        "replicon_count": "0",
        "scaffold_count": "60",
        "contig_count": "60",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000712295.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "2656",
        "protein_coding_gene_count": "2560",
        "non_coding_gene_count": "65",
        "pubmed_id": "25146141"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-06-25",
    "dateModified": "2014-06-25",
    "datePublished": "2014-06-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Synergistes jonesii"
        ],
        "sample_taxid": [
            "2754"
        ],
        "sample_host_organism": [
            "goat"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Hawaii"
        ],
        "sample_host_location_id": [],
        "data_size": "0.774 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2741240",
        "Number of Sequences": "60",
        "Longest Sequences (bp)": "224225",
        "N50 (bp)": "141998",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.3",
        "Number of CDSs": "2531",
        "Average Protein Length": "312.2",
        "Coding Ratio (%)": "86.5",
        "Number of rRNAs": "6",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
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                "relation_to_type": "type",
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            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cloacibacillus porcorum",
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                "species_taxid": 1197717,
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                "ani_threshold": 95,
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            }
        ],
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            "contamination": 4.17,
            "strain_heterogeneity": 100.0
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                "accession": "GCF_000712295.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Synergistaceae;g__Synergistes",
                "ani_circumscription_radius": 95.0,
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            },
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Synergistaceae;g__Caccocola",
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                "num_clustered_genomes": 3,
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            },
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            {
                "accession": "GCA_016288355.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Synergistaceae;g__Synergistes",
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            },
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.222,
        "cell_length": 0.079,
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        "growth_tmp": 37.0,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "jonesii"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}