{ "type": "genome", "identifier": "GCF_000714435.1", "organism": "Exiguobacterium alkaliphilum 12/1", "title": "Exiguobacterium alkaliphilum 12/1", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CSIR-IGIB, New Delhi", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000714435.1", "bioproject": "PRJNA224116", "biosample": "SAMN02720812", "wgs_master": "JJMW00000000.1", "refseq_category": "na", "taxid": "506480", "species_taxid": "1428684", "organism_name": "Exiguobacterium alkaliphilum 12/1", "infraspecific_name": "strain=12/1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/06/27", "asm_name": "Exiguobacterium_alkaliphilum", "asm_submitter": "CSIR-IGIB, New Delhi", "gbrs_paired_asm": "GCA_000714435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/714/435/GCF_000714435.1_Exiguobacterium_alkaliphilum", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3101937", "genome_size_ungapped": "3101937", "gc_percent": "53.000000", "replicon_count": "0", "scaffold_count": "72", "contig_count": "72", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000714435.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3213", "protein_coding_gene_count": "3113", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-06-27", "dateModified": "2014-06-27", "datePublished": "2014-06-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Exiguobacterium alkaliphilum 12/1" ], "sample_taxid": [ "506480" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India" ], "sample_host_location_id": [], "data_size": "0.880 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3101937", "Number of Sequences": "72", "Longest Sequences (bp)": "400839", "N50 (bp)": "119624", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.8", "Number of CDSs": "3148", "Average Protein Length": "296.5", "Coding Ratio (%)": "90.3", "Number of rRNAs": "2", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Exiguobacterium alkaliphilum", "strain": "strain=12/1", "accession": "GCA_000714435.1", "taxid": 1428684, "species_taxid": 1428684, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 961, "total_fragments": 998, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Exiguobacterium himgiriensis", "strain": "strain=K22_26", "accession": "GCA_025234715.1", "taxid": 384621, "species_taxid": 384621, "relation_to_type": "type", "validated": true, "ani": 90.019, "matched_fragments": 744, "total_fragments": 998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium aurantiacum", "strain": "strain=DSM 6208", "accession": "GCA_000702585.1", "taxid": 33987, "species_taxid": 33987, "relation_to_type": "type", "validated": true, "ani": 88.6492, "matched_fragments": 810, "total_fragments": 998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium aurantiacum", "strain": "strain=NCTC13163", "accession": "GCA_900450545.1", "taxid": 33987, "species_taxid": 33987, "relation_to_type": "type", "validated": true, "ani": 88.5969, "matched_fragments": 820, "total_fragments": 998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium chiriqhucha", "strain": "strain=RW-2", "accession": "GCA_000416965.1", "taxid": 1385984, "species_taxid": 1385984, "relation_to_type": "type", "validated": true, "ani": 84.5385, "matched_fragments": 739, "total_fragments": 998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium algae", "strain": "strain=S126", "accession": "GCA_018617875.1", "taxid": 2751250, "species_taxid": 2751250, "relation_to_type": "type", "validated": true, "ani": 80.9718, "matched_fragments": 493, "total_fragments": 998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium profundum", "strain": "strain=10C", "accession": "GCA_025234635.1", "taxid": 307643, "species_taxid": 307643, "relation_to_type": "type", "validated": true, "ani": 80.8907, "matched_fragments": 511, "total_fragments": 998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium aestuarii", "strain": "strain=TF_16", "accession": "GCA_025234735.1", "taxid": 273527, "species_taxid": 273527, "relation_to_type": "type", "validated": true, "ani": 80.8143, "matched_fragments": 510, "total_fragments": 998, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium qingdaonense", "strain": "strain=S82", "accession": "GCA_018617855.1", "taxid": 2751251, "species_taxid": 2751251, "relation_to_type": "type", "validated": true, "ani": 80.7772, "matched_fragments": 541, "total_fragments": 998, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_000714435.1", "gtdb_species": "s__Exiguobacterium alkaliphilum", "ani": 100.0, "matched_fragments": 970, "total_fragments": 998, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.62", "min_intra_species_ani": "97.18", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_018618475.1", "gtdb_species": "s__Exiguobacterium sp018618475", "ani": 89.9818, "matched_fragments": 827, "total_fragments": 998, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000702585.1", "gtdb_species": "s__Exiguobacterium aurantiacum", "ani": 88.6634, "matched_fragments": 809, "total_fragments": 998, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "97.93", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_018616375.1", "gtdb_species": "s__Exiguobacterium sp018616375", "ani": 84.648, "matched_fragments": 756, "total_fragments": 998, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018618415.1", "gtdb_species": "s__Exiguobacterium sp018618415", "ani": 84.5554, "matched_fragments": 733, "total_fragments": 998, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000416965.1", "gtdb_species": "s__Exiguobacterium chiriqhucha", "ani": 84.5327, "matched_fragments": 740, "total_fragments": 998, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.87", "min_intra_species_ani": "95.58", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 18, "status": "-" }, { "accession": "GCF_005960665.1", "gtdb_species": "s__Exiguobacterium mexicanum", "ani": 84.5033, "matched_fragments": 674, "total_fragments": 998, "gtdb_taxonomy": 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