{ "type": "genome", "identifier": "GCF_000715015.1", "organism": "Erythrobacter longus", "title": "Erythrobacter longus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xiamen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000715015.1", "bioproject": "PRJNA224116", "biosample": "SAMN02737001", "wgs_master": "JMIW00000000.1", "refseq_category": "reference genome", "taxid": "1044", "species_taxid": "1044", "organism_name": "Erythrobacter longus", "infraspecific_name": "strain=DSM 6997", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/06/27", "asm_name": "Ery_DSM 6997_v1", "asm_submitter": "Xiamen University", "gbrs_paired_asm": "GCA_000715015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/715/015/GCF_000715015.1_Ery_DSM_6997_v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3602162", "genome_size_ungapped": "3602162", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000715015.1-RS_2024_04_04", "annotation_date": "2024-04-04", "total_gene_count": "3326", "protein_coding_gene_count": "3257", "non_coding_gene_count": "48", "pubmed_id": "25059862" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-06-27", "dateModified": "2014-06-27", "datePublished": "2014-06-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Erythrobacter longus" ], "sample_taxid": [ "1044" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Aburatsubo 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"ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Qipengyuania qiaonensis", "strain": "strain=6D47A", "accession": "GCA_019711515.1", "taxid": 2867240, "species_taxid": 2867240, "relation_to_type": "type", "validated": true, "ani": 77.8021, "matched_fragments": 178, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gelatinilytica", "strain": "strain=1NDH1", "accession": "GCA_019711315.1", "taxid": 2867231, "species_taxid": 2867231, "relation_to_type": "type", "validated": true, "ani": 77.6006, "matched_fragments": 210, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 77.5563, "matched_fragments": 189, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain=DSM 16220", "accession": "GCA_002155425.1", "taxid": 267135, "species_taxid": 267135, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4223, "matched_fragments": 267, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter ramosus", "strain": "strain=JCM 10282", "accession": "GCA_009828055.1", "taxid": 35811, "species_taxid": 35811, "relation_to_type": "type", "validated": true, "ani": 77.3925, "matched_fragments": 281, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter sediminis", "strain": "strain=JGD-13", "accession": "GCA_016019885.1", "taxid": 2793064, "species_taxid": 2793064, "relation_to_type": "type", "validated": true, "ani": 77.3645, "matched_fragments": 166, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter colymbi", "strain": "strain=JCM 18338", "accession": "GCA_002155685.1", "taxid": 1161202, "species_taxid": 1161202, "relation_to_type": "type", "validated": true, "ani": 77.3321, "matched_fragments": 248, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter neustonensis", "strain": "strain=DSM 9434", "accession": "GCA_001663175.1", "taxid": 1112, "species_taxid": 1112, "relation_to_type": "type", "validated": true, "ani": 77.3204, "matched_fragments": 273, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania sphaerica", "strain": "strain=GH29", "accession": "GCA_019711595.1", "taxid": 2867243, "species_taxid": 2867243, "relation_to_type": "type", "validated": true, "ani": 77.3202, "matched_fragments": 219, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter litoralis", "strain": "strain=DSM 8509", "accession": "GCA_000714795.1", "taxid": 39960, "species_taxid": 39960, "relation_to_type": "type", "validated": true, "ani": 77.1999, "matched_fragments": 286, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiamenensis", "strain": "strain=1XM1-15A", "accession": "GCA_019711495.1", "taxid": 2867237, "species_taxid": 2867237, "relation_to_type": "type", "validated": true, "ani": 77.1802, "matched_fragments": 215, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter litoralis", "strain": "strain=DSM 8509", "accession": "GCA_001719165.1", "taxid": 39960, "species_taxid": 39960, "relation_to_type": "type", "validated": true, "ani": 77.1427, "matched_fragments": 294, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter odishensis", "strain": "strain=KCTC 23981", "accession": "GCA_003605195.1", "taxid": 1155476, "species_taxid": 1155476, "relation_to_type": "type", "validated": true, "ani": 77.1109, "matched_fragments": 167, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter suaedae", "strain": "strain=GH3-15", "accession": "GCA_005434915.1", "taxid": 2545755, "species_taxid": 2545755, "relation_to_type": "type", "validated": true, "ani": 77.0507, "matched_fragments": 135, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 76.7684, "matched_fragments": 137, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Altericroceibacterium endophyticum", "strain": "strain=LMG 29518", "accession": "GCA_009827595.1", "taxid": 1808508, "species_taxid": 1808508, "relation_to_type": "type", "validated": true, "ani": 76.6775, "matched_fragments": 101, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium lindaniclasticum", "strain": "strain=LE124", "accession": "GCA_000445125.1", "taxid": 1329895, "species_taxid": 1329895, "relation_to_type": "type", "validated": true, "ani": 76.5507, "matched_fragments": 90, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", "accession": "GCA_020179425.1", "taxid": 2871811, "species_taxid": 2871811, "relation_to_type": "type", "validated": true, "ani": 76.5257, "matched_fragments": 120, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium olei", "strain": "strain=TW-4", "accession": "GCA_012927405.1", "taxid": 2728851, "species_taxid": 2728851, "relation_to_type": "type", "validated": true, "ani": 76.433, "matched_fragments": 110, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium taihuense", "strain": "strain=DSM 17507", "accession": "GCA_014199635.1", "taxid": 260085, "species_taxid": 260085, "relation_to_type": "type", "validated": true, "ani": 76.354, "matched_fragments": 111, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium fluoreni", "strain": "strain=DSM 27568", "accession": "GCA_014196615.1", "taxid": 1391222, "species_taxid": 1391222, "relation_to_type": "type", "validated": true, "ani": 76.2908, "matched_fragments": 89, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium taihuense", "strain": "strain=CGMCC 1.3432", "accession": "GCA_007830315.1", "taxid": 260085, "species_taxid": 260085, "relation_to_type": "type", "validated": true, "ani": 76.1726, "matched_fragments": 108, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000715015.1", "gtdb_species": "s__Erythrobacter longus", "ani": 100.0, "matched_fragments": 1190, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_000714765.1", "gtdb_species": "s__Erythrobacter sp000714765", "ani": 78.1843, "matched_fragments": 406, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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