{
    "type": "genome",
    "identifier": "GCF_000715205.1",
    "organism": "Bacillus zhangzhouensis",
    "title": "Bacillus zhangzhouensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The Third Institute of State Oceanic Administration (SOA)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000715205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02870955",
        "wgs_master": "JOTP00000000.1",
        "refseq_category": "na",
        "taxid": "1178540",
        "species_taxid": "1178540",
        "organism_name": "Bacillus zhangzhouensis",
        "infraspecific_name": "strain=DW5-4",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/06/27",
        "asm_name": "SOAPdenovo v1.05",
        "asm_submitter": "The Third Institute of State Oceanic Administration (SOA)",
        "gbrs_paired_asm": "GCA_000715205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/715/205/GCF_000715205.1_SOAPdenovo_v1.05",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3736192",
        "genome_size_ungapped": "3736192",
        "gc_percent": "41.500000",
        "replicon_count": "0",
        "scaffold_count": "106",
        "contig_count": "106",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000715205.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "3898",
        "protein_coding_gene_count": "3765",
        "non_coding_gene_count": "45",
        "pubmed_id": "26705002"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-06-27",
    "dateModified": "2014-06-27",
    "datePublished": "2014-06-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacillus zhangzhouensis"
        ],
        "sample_taxid": [
            "1178540"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Zhangzhou city, Fujian province"
        ],
        "sample_host_location_id": [],
        "data_size": "1.063 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3736192",
        "Number of Sequences": "106",
        "Longest Sequences (bp)": "370918",
        "N50 (bp)": "135699",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.4",
        "Number of CDSs": "3816",
        "Average Protein Length": "283.7",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Bacillus zhangzhouensis",
                "strain": "strain=DW5-4",
                "accession": "GCA_000715205.1",
                "taxid": 1178540,
                "species_taxid": 1178540,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1199,
                "total_fragments": 1203,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bacillus safensis",
                "strain": "strain=FO-36b",
                "accession": "GCA_000691165.1",
                "taxid": 561879,
                "species_taxid": 561879,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.8734,
                "matched_fragments": 1079,
                "total_fragments": 1203,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus pumilus",
                "strain": "strain=ATCC 7061",
                "accession": "GCA_000172815.1",
                "taxid": 1408,
                "species_taxid": 1408,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 90.855,
                "matched_fragments": 1114,
                "total_fragments": 1203,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus safensis",
                "strain": "strain=FO-36b",
                "accession": "GCA_003097715.1",
                "taxid": 561879,
                "species_taxid": 561879,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.8384,
                "matched_fragments": 1102,
                "total_fragments": 1203,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus pumilus",
                "strain": "strain=NCTC10337",
                "accession": "GCA_900186955.1",
                "taxid": 1408,
                "species_taxid": 1408,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 90.8318,
                "matched_fragments": 1124,
                "total_fragments": 1203,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus safensis subsp. osmophilus",
                "strain": "strain=BC09",
                "accession": "GCA_003254445.1",
                "taxid": 1982610,
                "species_taxid": 561879,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.759,
                "matched_fragments": 1075,
                "total_fragments": 1203,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus australimaris",
                "strain": "strain=NH7I_1",
                "accession": "GCA_001307105.1",
                "taxid": 1326968,
                "species_taxid": 1326968,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.6361,
                "matched_fragments": 1087,
                "total_fragments": 1203,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus altitudinis",
                "strain": "strain=41KF2b",
                "accession": "GCA_000691145.1",
                "taxid": 293387,
                "species_taxid": 293387,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.0232,
                "matched_fragments": 1100,
                "total_fragments": 1203,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peribacillus acanthi",
                "strain": "strain=L28",
                "accession": "GCA_003073175.1",
                "taxid": 2171554,
                "species_taxid": 2171554,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5357,
                "matched_fragments": 57,
                "total_fragments": 1203,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus anthracis",
                "strain": "strain=Vollum",
                "accession": "GCA_022221345.1",
                "taxid": 1392,
                "species_taxid": 1392,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4552,
                "matched_fragments": 60,
                "total_fragments": 1203,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus sanguinis",
                "strain": "strain=BML-BC004",
                "accession": "GCA_018332475.1",
                "taxid": 2817476,
                "species_taxid": 2817476,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0617,
                "matched_fragments": 60,
                "total_fragments": 1203,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000715205.1",
                "gtdb_species": "s__Bacillus zhangzhouensis",
                "ani": 100.0,
                "matched_fragments": 1199,
                "total_fragments": 1203,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.04",
                "min_intra_species_ani": "95.33",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014764715.1",
                "gtdb_species": "s__Bacillus sp014764715",
                "ani": 92.7675,
                "matched_fragments": 1073,
                "total_fragments": 1203,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002744245.1",
                "gtdb_species": "s__Bacillus pumilus_M",
                "ani": 91.8279,
                "matched_fragments": 1035,
                "total_fragments": 1203,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000691165.1",
                "gtdb_species": "s__Bacillus safensis",
                "ani": 90.8734,
                "matched_fragments": 1079,
                "total_fragments": 1203,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.22",
                "min_intra_species_ani": "95.80",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 99,
                "status": "-"
            },
            {
                "accession": "GCF_900186955.1",
                "gtdb_species": "s__Bacillus pumilus",
                "ani": 90.8318,
                "matched_fragments": 1124,
                "total_fragments": 1203,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.74",
                "min_intra_species_ani": "95.13",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 168,
                "status": "-"
            },
            {
                "accession": "GCF_000300535.1",
                "gtdb_species": "s__Bacillus xiamenensis",
                "ani": 90.7034,
                "matched_fragments": 1003,
                "total_fragments": 1203,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.27",
                "min_intra_species_ani": "99.24",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001307105.1",
                "gtdb_species": "s__Bacillus australimaris",
                "ani": 90.6361,
                "matched_fragments": 1087,
                "total_fragments": 1203,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003431975.1",
                "gtdb_species": "s__Bacillus pumilus_N",
                "ani": 90.038,
                "matched_fragments": 1108,
                "total_fragments": 1203,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.39",
                "min_intra_species_ani": "99.09",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000691145.1",
                "gtdb_species": "s__Bacillus altitudinis",
                "ani": 90.0232,
                "matched_fragments": 1100,
                "total_fragments": 1203,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.17",
                "min_intra_species_ani": "97.02",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 117,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.176,
        "cell_length": 0.387,
        "doubling_h": -0.134,
        "growth_tmp": 31.412,
        "optimum_tmp": 33.64,
        "optimum_ph": 7.746,
        "genome_size": 3736192.0,
        "gc_content": 40.577,
        "coding_genes": 4334.002,
        "rRNA16S_genes": 9.859,
        "tRNA_genes": 88.223,
        "gram_stain": 1.0,
        "sporulation": 0.975,
        "motility": 0.841,
        "range_salinity": 0.6,
        "facultative_respiration": 0.16,
        "anaerobic_respiration": 0.011,
        "aerobic_respiration": 0.827,
        "mesophilic_range_tmp": 0.928,
        "thermophilic_range_tmp": 0.053,
        "psychrophilic_range_tmp": 0.017,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Bacillus",
        "zhangzhouensis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}