{
    "type": "genome",
    "identifier": "GCF_000715845.1",
    "organism": "Streptomyces monomycini",
    "title": "Streptomyces monomycini",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Illinois",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000715845.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02645312",
        "wgs_master": "JNYL00000000.1",
        "refseq_category": "reference genome",
        "taxid": "371720",
        "species_taxid": "371720",
        "organism_name": "Streptomyces monomycini",
        "infraspecific_name": "strain=NRRL B-24309",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/07/01",
        "asm_name": "ASM71584v1",
        "asm_submitter": "University of Illinois",
        "gbrs_paired_asm": "GCA_000715845.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/715/845/GCF_000715845.1_ASM71584v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "9111622",
        "genome_size_ungapped": "8988808",
        "gc_percent": "72.000000",
        "replicon_count": "0",
        "scaffold_count": "223",
        "contig_count": "645",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000715845.1-RS_2024_04_22",
        "annotation_date": "2024-04-22",
        "total_gene_count": "8105",
        "protein_coding_gene_count": "7660",
        "non_coding_gene_count": "65",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-07-01",
    "dateModified": "2014-07-01",
    "datePublished": "2014-07-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces monomycini"
        ],
        "sample_taxid": [
            "371720"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Unknown"
        ],
        "sample_host_location_id": [],
        "data_size": "2.432 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 5.21,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "9111622",
        "Number of Sequences": "223",
        "Longest Sequences (bp)": "418018",
        "N50 (bp)": "86123",
        "Gap Ratio (%)": "1.347894",
        "GCcontent (%)": "72.0",
        "Number of CDSs": "7851",
        "Average Protein Length": "317.1",
        "Coding Ratio (%)": "82.0",
        "Number of rRNAs": "2",
        "Number of tRNAs": "88",
        "Number of CRISPRs": "12"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Streptomyces monomycini",
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                "accession": "GCA_000715845.1",
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                "relation_to_type": "type",
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                "ani": 99.9999,
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                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces monomycini",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Streptomyces paromomycinus",
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                "accession": "GCA_003865155.1",
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                "species_taxid": 92743,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "species_taxid": 68185,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.0694,
                "matched_fragments": 2447,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces albofaciens",
                "strain": "strain=ATCC 23873",
                "accession": "GCA_008634025.1",
                "taxid": 66866,
                "species_taxid": 66866,
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                "validated": true,
                "ani": 89.9006,
                "matched_fragments": 2281,
                "total_fragments": 2939,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces rimosus subsp. rimosus",
                "strain": "strain=NRRL ISP-5260",
                "accession": "GCA_000717285.1",
                "taxid": 132474,
                "species_taxid": 1927,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.7137,
                "matched_fragments": 2272,
                "total_fragments": 2939,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces rimosus subsp. rimosus",
                "strain": "strain=R7",
                "accession": "GCA_022760195.1",
                "taxid": 132474,
                "species_taxid": 1927,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.6747,
                "matched_fragments": 2332,
                "total_fragments": 2939,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces pinistramenti",
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                "accession": "GCA_020564935.1",
                "taxid": 2884812,
                "species_taxid": 2884812,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1552,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces panaciradicis",
                "strain": "strain=NBRC 109811",
                "accession": "GCA_023516615.1",
                "taxid": 1470261,
                "species_taxid": 1470261,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.67,
                "matched_fragments": 1296,
                "total_fragments": 2939,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            {
                "accession": "GCF_000715845.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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                "accession": "GCF_003865135.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.95",
                "min_intra_species_ani": "95.89",
                "mean_intra_species_af": "0.90",
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                "num_clustered_genomes": 4,
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            },
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_000720725.1",
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            },
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_008704655.1",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": -0.05,
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        "bacillus_cell_shape": 0.208,
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    "_genome_taxon": [
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        "monomycini"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}