{ "type": "genome", "identifier": "GCF_000716545.1", "organism": "Kitasatospora phosalacinea", "title": "Kitasatospora phosalacinea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Illinois", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000716545.1", "bioproject": "PRJNA224116", "biosample": "SAMN02645204", "wgs_master": "JNWZ00000000.1", "refseq_category": "reference genome", "taxid": "2065", "species_taxid": "2065", "organism_name": "Kitasatospora phosalacinea", "infraspecific_name": "strain=NRRL B-16230", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/01", "asm_name": "ASM71654v1", "asm_submitter": "University of Illinois", "gbrs_paired_asm": "GCA_000716545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/716/545/GCF_000716545.1_ASM71654v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7620895", "genome_size_ungapped": "7620895", "gc_percent": "74.000000", "replicon_count": "0", "scaffold_count": "227", "contig_count": "227", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000716545.1-RS_2024_04_29", "annotation_date": "2024-04-29", "total_gene_count": "6995", "protein_coding_gene_count": "6673", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-01", "dateModified": "2014-07-01", "datePublished": "2014-07-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Kitasatospora phosalacinea" ], "sample_taxid": [ "2065" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Unknown" ], "sample_host_location_id": [], "data_size": "2.008 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7620895", "Number of Sequences": "227", "Longest Sequences (bp)": "241841", "N50 (bp)": "89226", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "74.1", "Number of CDSs": "6895", "Average Protein Length": "317.3", "Coding Ratio (%)": "86.1", "Number of rRNAs": "2", "Number of tRNAs": "92", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kitasatospora phosalacinea", "strain": "strain=NRRL B-16230", "accession": "GCA_000716545.1", "taxid": 2065, "species_taxid": 2065, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2444, "total_fragments": 2451, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kitasatospora setae", "strain": "strain=NRRL B-16185", "accession": "GCA_000716965.1", "taxid": 2066, "species_taxid": 2066, "relation_to_type": "type", "validated": true, "ani": 91.236, "matched_fragments": 1870, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora setae", "strain": "strain=KM-6054", "accession": "GCA_000269985.1", "taxid": 2066, "species_taxid": 2066, "relation_to_type": "type", "validated": true, "ani": 91.1981, "matched_fragments": 1930, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora cheerisanensis", "strain": "strain=KCTC 2395", "accession": "GCA_000696185.1", "taxid": 81942, "species_taxid": 81942, "relation_to_type": "type", "validated": true, "ani": 88.4867, "matched_fragments": 1806, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora griseola", "strain": "strain=JCM 3339", "accession": "GCA_014648555.1", "taxid": 2064, "species_taxid": 2064, "relation_to_type": "type", "validated": true, "ani": 88.1834, "matched_fragments": 1731, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora paracochleata", "strain": "strain=DSM 41656", "accession": "GCA_024172095.1", "taxid": 58354, "species_taxid": 58354, "relation_to_type": "type", "validated": true, "ani": 84.4836, "matched_fragments": 1578, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rubellomurinus", "strain": "strain=ATCC 31215", "accession": "GCA_000961885.1", "taxid": 359131, "species_taxid": 359131, "relation_to_type": "type", "validated": true, "ani": 83.1731, "matched_fragments": 1446, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora purpeofusca", "strain": "strain=NRRL B-1817", 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