{ "type": "genome", "identifier": "GCF_000716675.1", "organism": "Streptomyces alboflavus", "title": "Streptomyces alboflavus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Illinois", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000716675.1", "bioproject": "PRJNA224116", "biosample": "SAMN02645294", "wgs_master": "JNXT00000000.1", "refseq_category": "reference genome", "taxid": "67267", "species_taxid": "67267", "organism_name": "Streptomyces alboflavus", "infraspecific_name": "strain=NRRL B-2373", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/01", "asm_name": "ASM71667v1", "asm_submitter": "University of Illinois", "gbrs_paired_asm": "GCA_000716675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/716/675/GCF_000716675.1_ASM71667v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9717375", "genome_size_ungapped": "9717375", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "171", "contig_count": "171", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000716675.1-RS_2024_05_16", "annotation_date": "2024-05-16", "total_gene_count": "8327", "protein_coding_gene_count": "8074", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-01", "dateModified": "2014-07-01", "datePublished": "2014-07-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces alboflavus" ], "sample_taxid": [ "67267" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Unknown" ], 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"status": "conclusive" }, { "organism_name": "Streptomyces flavofungini", "strain": "strain=JCM 4753", "accession": "GCA_014650815.1", "taxid": 68200, "species_taxid": 68200, "relation_to_type": "type", "validated": true, "ani": 92.6068, "matched_fragments": 2599, "total_fragments": 3159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces flavofungini", "strain": "strain=JCM 4753", "accession": "GCA_016411765.1", "taxid": 68200, "species_taxid": 68200, "relation_to_type": "type", "validated": true, "ani": 92.5296, "matched_fragments": 2632, "total_fragments": 3159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lasiicapitis", "strain": "strain=CGMCC 4.7349", "accession": "GCA_014646335.1", "taxid": 1923961, "species_taxid": 1923961, "relation_to_type": "type", "validated": true, "ani": 89.7742, "matched_fragments": 2453, "total_fragments": 3159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"strain=NRRL B-24165", "accession": "GCA_001418325.1", "taxid": 545121, "species_taxid": 545121, "relation_to_type": "type", "validated": true, "ani": 84.6524, "matched_fragments": 1727, "total_fragments": 3159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces durmitorensis", "strain": "strain=MS405", "accession": "GCA_023498005.1", "taxid": 319947, "species_taxid": 319947, "relation_to_type": "type", "validated": true, "ani": 84.2202, "matched_fragments": 2002, "total_fragments": 3159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseicoloratus", "strain": "strain=TRM S81-3", "accession": "GCA_014534645.1", "taxid": 2752516, "species_taxid": 2752516, "relation_to_type": "type", "validated": true, "ani": 82.3233, "matched_fragments": 1587, "total_fragments": 3159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces blattellae", "strain": "strain=TRM63209", "accession": 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"min_intra_species_ani": "98.86", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000414115.1", "gtdb_species": "s__Streptomyces aurantiacus_A", "ani": 89.6724, "matched_fragments": 2073, "total_fragments": 3159, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014649395.1", "gtdb_species": "s__Streptomyces aureoverticillatus", "ani": 89.6456, "matched_fragments": 2353, "total_fragments": 3159, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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"mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_002754715.1", "gtdb_species": "s__Streptomyces sp002754715", "ani": 81.8623, "matched_fragments": 1645, "total_fragments": 3159, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 27.0, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 9879334.667, "gc_content": 72.008, "coding_genes": 7628.0, "rRNA16S_genes": 6.0, "tRNA_genes": 68.0, "gram_stain": 1.0, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, 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