{
    "type": "genome",
    "identifier": "GCF_000716715.1",
    "organism": "Dactylosporangium aurantiacum",
    "title": "Dactylosporangium aurantiacum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Illinois",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000716715.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02645310",
        "wgs_master": "JNYJ00000000.1",
        "refseq_category": "na",
        "taxid": "35754",
        "species_taxid": "35754",
        "organism_name": "Dactylosporangium aurantiacum",
        "infraspecific_name": "strain=NRRL B-8018",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/07/01",
        "asm_name": "ASM71671v1",
        "asm_submitter": "University of Illinois",
        "gbrs_paired_asm": "GCA_000716715.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/716/715/GCF_000716715.1_ASM71671v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "11445570",
        "genome_size_ungapped": "11445570",
        "gc_percent": "73.000000",
        "replicon_count": "0",
        "scaffold_count": "228",
        "contig_count": "228",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000716715.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "10393",
        "protein_coding_gene_count": "10078",
        "non_coding_gene_count": "92",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-07-01",
    "dateModified": "2014-07-01",
    "datePublished": "2014-07-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Dactylosporangium aurantiacum"
        ],
        "sample_taxid": [
            "35754"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Unknown"
        ],
        "sample_host_location_id": [],
        "data_size": "3.013 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "11445570",
        "Number of Sequences": "228",
        "Longest Sequences (bp)": "528764",
        "N50 (bp)": "205318",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "73.2",
        "Number of CDSs": "10284",
        "Average Protein Length": "331.1",
        "Coding Ratio (%)": "89.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "122",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Dactylosporangium aurantiacum",
                "strain": "strain=NRRL B-8018",
                "accession": "GCA_000716715.1",
                "taxid": 35754,
                "species_taxid": 35754,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 3726,
                "total_fragments": 3737,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Dactylosporangium aurantiacum",
                "strain": "strain=NRRL B-8018",
                "accession": "GCA_025264705.1",
                "taxid": 35754,
                "species_taxid": 35754,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9874,
                "matched_fragments": 3736,
                "total_fragments": 3737,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Dactylosporangium siamense",
                "strain": "strain=NBRC 106093",
                "accession": "GCA_016862795.1",
                "taxid": 685454,
                "species_taxid": 685454,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.0829,
                "matched_fragments": 2712,
                "total_fragments": 3737,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dactylosporangium sucinum",
                "strain": "strain=JCM 19831",
                "accession": "GCA_014647515.1",
                "taxid": 1424081,
                "species_taxid": 1424081,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6161,
                "matched_fragments": 2206,
                "total_fragments": 3737,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dactylosporangium fulvum",
                "strain": "strain=NRRL B-16292",
                "accession": "GCA_025137375.1",
                "taxid": 53359,
                "species_taxid": 53359,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5359,
                "matched_fragments": 2054,
                "total_fragments": 3737,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dactylosporangium roseum",
                "strain": "strain=NRRL B-16295",
                "accession": "GCA_025264685.1",
                "taxid": 47989,
                "species_taxid": 47989,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2169,
                "matched_fragments": 1689,
                "total_fragments": 3737,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dactylosporangium matsuzakiense",
                "strain": "strain=NRRL B-16293",
                "accession": "GCA_025264725.1",
                "taxid": 53360,
                "species_taxid": 53360,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4158,
                "matched_fragments": 2099,
                "total_fragments": 3737,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Micromonospora acroterricola",
                "strain": "strain=5R2A7",
                "accession": "GCA_003172955.1",
                "taxid": 2202421,
                "species_taxid": 2202421,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1782,
                "matched_fragments": 1090,
                "total_fragments": 3737,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000716715.1",
                "gtdb_species": "s__Dactylosporangium aurantiacum",
                "ani": 100.0,
                "matched_fragments": 3726,
                "total_fragments": 3737,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Dactylosporangium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_016862795.1",
                "gtdb_species": "s__Dactylosporangium siamense",
                "ani": 88.1497,
                "matched_fragments": 2700,
                "total_fragments": 3737,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Dactylosporangium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014647515.1",
                "gtdb_species": "s__Dactylosporangium sucinum",
                "ani": 82.6328,
                "matched_fragments": 2203,
                "total_fragments": 3737,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Dactylosporangium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016863475.1",
                "gtdb_species": "s__Spirilliplanes yamanashiensis",
                "ani": 78.354,
                "matched_fragments": 1334,
                "total_fragments": 3737,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Spirilliplanes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014205165.1",
                "gtdb_species": "s__Micromonospora carbonacea",
                "ani": 78.1858,
                "matched_fragments": 1423,
                "total_fragments": 3737,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora",
                "ani_circumscription_radius": 95.5545,
                "mean_intra_species_ani": "99.19",
                "min_intra_species_ani": "98.38",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900090245.1",
                "gtdb_species": "s__Micromonospora halophytica",
                "ani": 78.1659,
                "matched_fragments": 1157,
                "total_fragments": 3737,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900090295.1",
                "gtdb_species": "s__Micromonospora coxensis",
                "ani": 78.1225,
                "matched_fragments": 1316,
                "total_fragments": 3737,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004217615.1",
                "gtdb_species": "s__Micromonospora kangleipakensis",
                "ani": 78.0953,
                "matched_fragments": 1234,
                "total_fragments": 3737,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014648395.1",
                "gtdb_species": "s__Micromonospora fulviviridis",
                "ani": 78.0909,
                "matched_fragments": 1314,
                "total_fragments": 3737,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.01",
                "min_intra_species_ani": "95.01",
                "mean_intra_species_af": "0.74",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900091435.1",
                "gtdb_species": "s__Micromonospora chaiyaphumensis",
                "ani": 78.0367,
                "matched_fragments": 1294,
                "total_fragments": 3737,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.16",
                "min_intra_species_ani": "95.15",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900090265.1",
                "gtdb_species": "s__Micromonospora rifamycinica",
                "ani": 77.9692,
                "matched_fragments": 1258,
                "total_fragments": 3737,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900091515.1",
                "gtdb_species": "s__Micromonospora purpureochromogenes",
                "ani": 77.9611,
                "matched_fragments": 1251,
                "total_fragments": 3737,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.27",
                "min_intra_species_ani": "95.68",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_009720365.1",
                "gtdb_species": "s__Catellatospora paridis",
                "ani": 77.8656,
                "matched_fragments": 1432,
                "total_fragments": 3737,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Catellatospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011297335.1",
                "gtdb_species": "s__Catellatospora methionotrophica",
                "ani": 77.8649,
                "matched_fragments": 1409,
                "total_fragments": 3737,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Catellatospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003626655.1",
                "gtdb_species": "s__Micromonospora costi",
                "ani": 77.8236,
                "matched_fragments": 1261,
                "total_fragments": 3737,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018327705.1",
                "gtdb_species": "s__Catellatospora sp018327705",
                "ani": 77.8135,
                "matched_fragments": 1520,
                "total_fragments": 3737,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Catellatospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014204895.1",
                "gtdb_species": "s__Actinoplanes abujensis",
                "ani": 77.6384,
                "matched_fragments": 1316,
                "total_fragments": 3737,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016861975.1",
                "gtdb_species": "s__Actinocatenispora rupis",
                "ani": 76.443,
                "matched_fragments": 1215,
                "total_fragments": 3737,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinocatenispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.056,
        "cell_length": 0.243,
        "doubling_h": null,
        "growth_tmp": 29.0,
        "optimum_tmp": 29.583,
        "optimum_ph": 7.025,
        "genome_size": 7292911.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.833,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.75,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.25,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Dactylosporangium",
        "aurantiacum"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}