{
    "type": "genome",
    "identifier": "GCF_000716965.1",
    "organism": "Kitasatospora setae",
    "title": "Kitasatospora setae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Illinois",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000716965.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02645203",
        "wgs_master": "JNWY00000000.1",
        "refseq_category": "na",
        "taxid": "2066",
        "species_taxid": "2066",
        "organism_name": "Kitasatospora setae",
        "infraspecific_name": "strain=NRRL B-16185",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/07/01",
        "asm_name": "ASM71696v1",
        "asm_submitter": "University of Illinois",
        "gbrs_paired_asm": "GCA_000716965.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/716/965/GCF_000716965.1_ASM71696v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8560950",
        "genome_size_ungapped": "8560950",
        "gc_percent": "74.500000",
        "replicon_count": "0",
        "scaffold_count": "298",
        "contig_count": "298",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000716965.1-RS_2024_05_16",
        "annotation_date": "2024-05-16",
        "total_gene_count": "7678",
        "protein_coding_gene_count": "7344",
        "non_coding_gene_count": "82",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-07-01",
    "dateModified": "2014-07-01",
    "datePublished": "2014-07-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Kitasatospora setae"
        ],
        "sample_taxid": [
            "2066"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan: Setagaya-u, Tokyo"
        ],
        "sample_host_location_id": [],
        "data_size": "2.245 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 1.04,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8560950",
        "Number of Sequences": "298",
        "Longest Sequences (bp)": "285329",
        "N50 (bp)": "97127",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "74.3",
        "Number of CDSs": "7534",
        "Average Protein Length": "326.7",
        "Coding Ratio (%)": "86.3",
        "Number of rRNAs": "2",
        "Number of tRNAs": "103",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Kitasatospora setae",
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                "accession": "GCA_000716965.1",
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                "species_taxid": 2066,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2738,
                "total_fragments": 2743,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Kitasatospora setae",
                "strain": "strain=KM-6054",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9829,
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                "total_fragments": 2743,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Kitasatospora phosalacinea",
                "strain": "strain=NRRL B-16230",
                "accession": "GCA_000716545.1",
                "taxid": 2065,
                "species_taxid": 2065,
                "relation_to_type": "type",
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                "total_fragments": 2743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kitasatospora cheerisanensis",
                "strain": "strain=KCTC 2395",
                "accession": "GCA_000696185.1",
                "taxid": 81942,
                "species_taxid": 81942,
                "relation_to_type": "type",
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                "ani": 87.9982,
                "matched_fragments": 1898,
                "total_fragments": 2743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kitasatospora griseola",
                "strain": "strain=JCM 3339",
                "accession": "GCA_014648555.1",
                "taxid": 2064,
                "species_taxid": 2064,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.8397,
                "matched_fragments": 1822,
                "total_fragments": 2743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kitasatospora paracochleata",
                "strain": "strain=DSM 41656",
                "accession": "GCA_024172095.1",
                "taxid": 58354,
                "species_taxid": 58354,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.199,
                "matched_fragments": 1637,
                "total_fragments": 2743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kitasatospora purpeofusca",
                "strain": "strain=NRRL B-1817",
                "accession": "GCA_000718025.1",
                "taxid": 67352,
                "species_taxid": 67352,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.763,
                "matched_fragments": 1630,
                "total_fragments": 2743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kitasatospora humi",
                "strain": "strain=RB6PN24",
                "accession": "GCA_020907985.1",
                "taxid": 2893891,
                "species_taxid": 2893891,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8926,
                "matched_fragments": 1319,
                "total_fragments": 2743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces rubrisoli",
                "strain": "strain=DSM 42083",
                "accession": "GCA_024436055.1",
                "taxid": 1387313,
                "species_taxid": 1387313,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0353,
                "matched_fragments": 974,
                "total_fragments": 2743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces lichenis",
                "strain": "strain=LCR6-01",
                "accession": "GCA_023218175.1",
                "taxid": 2306967,
                "species_taxid": 2306967,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0306,
                "matched_fragments": 1175,
                "total_fragments": 2743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinacidiphila alni",
                "strain": "strain=CGMCC 4.3510",
                "accession": "GCA_900112845.1",
                "taxid": 380248,
                "species_taxid": 380248,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9476,
                "matched_fragments": 1186,
                "total_fragments": 2743,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 1.04,
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        },
        "gtdb_result": [
            {
                "accession": "GCF_000269985.1",
                "gtdb_species": "s__Kitasatospora setae",
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                "matched_fragments": 2741,
                "total_fragments": 2743,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
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                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003751605.1",
                "gtdb_species": "s__Kitasatospora cineracea",
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                "matched_fragments": 2014,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora",
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                "mean_intra_species_ani": "97.58",
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                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000716545.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "matched_fragments": 1990,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_013364235.1",
                "gtdb_species": "s__Kitasatospora sp013364235",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002813165.1",
                "gtdb_species": "s__Kitasatospora sp002813165",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora",
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                "num_clustered_genomes": 2,
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            }
        ]
    },
    "_bac2feature": {
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        "cell_diameter": null,
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        "doubling_h": null,
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        "gram_stain": 1.0,
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        "range_salinity": null,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.5,
        "coccus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Kitasatospora",
        "setae"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}