{ "type": "genome", "identifier": "GCF_000718085.1", "organism": "Mycetocola saprophilus", "title": "Mycetocola saprophilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Illinois", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000718085.1", "bioproject": "PRJNA224116", "biosample": "SAMN02645226", "wgs_master": "JOEC00000000.1", "refseq_category": "reference genome", "taxid": "76636", "species_taxid": "76636", "organism_name": "Mycetocola saprophilus", "infraspecific_name": "strain=NRRL B-24119", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/02", "asm_name": "ASM71808v1", "asm_submitter": "University of Illinois", "gbrs_paired_asm": "GCA_000718085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/718/085/GCF_000718085.1_ASM71808v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3451363", "genome_size_ungapped": "3451363", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000718085.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "3220", "protein_coding_gene_count": "3140", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-02", "dateModified": "2014-07-02", "datePublished": "2014-07-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycetocola saprophilus" ], "sample_taxid": [ "76636" ], "sample_host_organism": [ "Pleurotus ostreatus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Yamagata prefecture" ], "sample_host_location_id": [], "data_size": "0.953 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3451363", "Number of Sequences": "20", "Longest Sequences (bp)": "1442098", "N50 (bp)": "1242393", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.1", "Number of CDSs": "3226", "Average Protein Length": "321.3", "Coding Ratio (%)": "90.1", "Number of rRNAs": "2", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycetocola saprophilus", "strain": "strain=NRRL B-24119", "accession": "GCA_000718085.1", "taxid": 76636, "species_taxid": 76636, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1142, 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"below_threshold" }, { "organism_name": "Microterricola viridarii", "strain": "strain=DSM 21772", "accession": "GCA_900104895.1", "taxid": 412690, "species_taxid": 412690, "relation_to_type": "type", "validated": true, "ani": 78.4103, "matched_fragments": 298, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microterricola pindariensis", "strain": "strain=PON 10", "accession": "GCA_002936985.1", "taxid": 478010, "species_taxid": 478010, "relation_to_type": "type", "validated": true, "ani": 78.3797, "matched_fragments": 295, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microterricola gilva", "strain": "strain=DSM 18319", "accession": "GCA_004217495.1", "taxid": 393267, "species_taxid": 393267, "relation_to_type": "type", "validated": true, "ani": 78.2456, "matched_fragments": 254, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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