{
    "type": "genome",
    "identifier": "GCF_000718095.1",
    "organism": "Streptomyces scopuliridis RB72",
    "title": "Streptomyces scopuliridis RB72",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Illinois",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000718095.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02645233",
        "wgs_master": "JOEI00000000.1",
        "refseq_category": "na",
        "taxid": "1440053",
        "species_taxid": "452529",
        "organism_name": "Streptomyces scopuliridis RB72",
        "infraspecific_name": "strain=NRRL B-24574",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/07/02",
        "asm_name": "ASM71809v1",
        "asm_submitter": "University of Illinois",
        "gbrs_paired_asm": "GCA_000718095.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/718/095/GCF_000718095.1_ASM71809v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8243500",
        "genome_size_ungapped": "8243500",
        "gc_percent": "70.500000",
        "replicon_count": "0",
        "scaffold_count": "117",
        "contig_count": "117",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000718095.1-RS_2024_04_26",
        "annotation_date": "2024-04-26",
        "total_gene_count": "7247",
        "protein_coding_gene_count": "6897",
        "non_coding_gene_count": "77",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-07-02",
    "dateModified": "2014-07-02",
    "datePublished": "2014-07-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces scopuliridis RB72"
        ],
        "sample_taxid": [
            "1440053"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Rainbow Bluff, Lynn, AL"
        ],
        "sample_host_location_id": [],
        "data_size": "2.232 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 1.04,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8243500",
        "Number of Sequences": "117",
        "Longest Sequences (bp)": "614009",
        "N50 (bp)": "275119",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "70.4",
        "Number of CDSs": "7198",
        "Average Protein Length": "333.0",
        "Coding Ratio (%)": "87.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "84",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptomyces scopuliridis",
                "strain": "strain=NRRL B-24574",
                "accession": "GCA_000718095.1",
                "taxid": 452529,
                "species_taxid": 452529,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2699,
                "total_fragments": 2704,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces scopuliridis",
                "strain": "strain=RB72",
                "accession": "GCA_003073355.1",
                "taxid": 452529,
                "species_taxid": 452529,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.8895,
                "matched_fragments": 2404,
                "total_fragments": 2704,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces lushanensis",
                "strain": "strain=NRRL B-24994",
                "accession": "GCA_001700515.1",
                "taxid": 1434255,
                "species_taxid": 1434255,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.7481,
                "matched_fragments": 1463,
                "total_fragments": 2704,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces odonnellii",
                "strain": "strain=NRRL B-24891",
                "accession": "GCA_000981895.1",
                "taxid": 1417980,
                "species_taxid": 1417980,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.4588,
                "matched_fragments": 1561,
                "total_fragments": 2704,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces corynorhini",
                "strain": "strain=AC230",
                "accession": "GCA_003346515.1",
                "taxid": 2282652,
                "species_taxid": 2282652,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.7844,
                "matched_fragments": 1525,
                "total_fragments": 2704,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces paludis",
                "strain": "strain=GSSD-12",
                "accession": "GCA_003344965.1",
                "taxid": 2282738,
                "species_taxid": 2282738,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6774,
                "matched_fragments": 1632,
                "total_fragments": 2704,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces liangshanensis",
                "strain": "strain=QMT-12",
                "accession": "GCA_011694815.1",
                "taxid": 2717324,
                "species_taxid": 2717324,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.7584,
                "matched_fragments": 1583,
                "total_fragments": 2704,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces formicae",
                "strain": "strain=1H-GS9",
                "accession": "GCA_022647665.1",
                "taxid": 1616117,
                "species_taxid": 1616117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0734,
                "matched_fragments": 1417,
                "total_fragments": 2704,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces lichenis",
                "strain": "strain=LCR6-01",
                "accession": "GCA_023218175.1",
                "taxid": 2306967,
                "species_taxid": 2306967,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8687,
                "matched_fragments": 1281,
                "total_fragments": 2704,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces somaliensis",
                "strain": "strain=DSM 40738",
                "accession": "GCA_024349285.1",
                "taxid": 78355,
                "species_taxid": 78355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6564,
                "matched_fragments": 1014,
                "total_fragments": 2704,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces sudanensis",
                "strain": "strain=SD 504",
                "accession": "GCA_023614315.1",
                "taxid": 436397,
                "species_taxid": 436397,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4974,
                "matched_fragments": 1047,
                "total_fragments": 2704,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces spinosus",
                "strain": "strain=SBTS01",
                "accession": "GCA_020400655.1",
                "taxid": 2872623,
                "species_taxid": 2872623,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8716,
                "matched_fragments": 1357,
                "total_fragments": 2704,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 1.04,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000718095.1",
                "gtdb_species": "s__Streptomyces scopuliridis",
                "ani": 100.0,
                "matched_fragments": 2699,
                "total_fragments": 2704,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004151105.1",
                "gtdb_species": "s__Streptomyces sp004151105",
                "ani": 93.4952,
                "matched_fragments": 2096,
                "total_fragments": 2704,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001700515.1",
                "gtdb_species": "s__Streptomyces lushanensis",
                "ani": 86.7631,
                "matched_fragments": 1460,
                "total_fragments": 2704,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000981895.1",
                "gtdb_species": "s__Streptomyces odonnellii",
                "ani": 86.4978,
                "matched_fragments": 1555,
                "total_fragments": 2704,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.86",
                "min_intra_species_ani": "95.86",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003346515.1",
                "gtdb_species": "s__Streptomyces corynorhini",
                "ani": 85.7523,
                "matched_fragments": 1529,
                "total_fragments": 2704,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003344965.1",
                "gtdb_species": "s__Streptomyces paludis",
                "ani": 85.688,
                "matched_fragments": 1631,
                "total_fragments": 2704,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011694815.1",
                "gtdb_species": "s__Streptomyces liangshanensis",
                "ani": 84.751,
                "matched_fragments": 1584,
                "total_fragments": 2704,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002009175.1",
                "gtdb_species": "s__Streptomyces niveus_A",
                "ani": 83.825,
                "matched_fragments": 1585,
                "total_fragments": 2704,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.201,
        "cell_length": -0.05,
        "doubling_h": 0.103,
        "growth_tmp": 27.757,
        "optimum_tmp": 29.036,
        "optimum_ph": 7.341,
        "genome_size": 8292419.302,
        "gc_content": 71.543,
        "coding_genes": 7141.289,
        "rRNA16S_genes": 6.155,
        "tRNA_genes": 67.804,
        "gram_stain": 0.998,
        "sporulation": 0.958,
        "motility": 0.049,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.005,
        "aerobic_respiration": 0.994,
        "mesophilic_range_tmp": 0.98,
        "thermophilic_range_tmp": 0.019,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.208,
        "coccus_cell_shape": 0.032,
        "filament_cell_shape": 0.582,
        "coccobacillus_cell_shape": 0.098,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.076
    },
    "_genome_taxon": [
        "Streptomyces",
        "scopuliridis",
        "RB72"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}