{ "type": "genome", "identifier": "GCF_000718985.1", "organism": "Streptomyces megasporus", "title": "Streptomyces megasporus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Illinois", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000718985.1", "bioproject": "PRJNA224116", "biosample": "SAMN02645209", "wgs_master": "JODL00000000.1", "refseq_category": "reference genome", "taxid": "44060", "species_taxid": "44060", "organism_name": "Streptomyces megasporus", "infraspecific_name": "strain=NRRL B-16372", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/02", "asm_name": "ASM71898v1", "asm_submitter": "University of Illinois", "gbrs_paired_asm": "GCA_000718985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/718/985/GCF_000718985.1_ASM71898v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5850061", "genome_size_ungapped": "5850061", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "195", "contig_count": "195", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000718985.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "5423", "protein_coding_gene_count": "5157", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-02", "dateModified": "2014-07-02", "datePublished": "2014-07-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces megasporus" ], "sample_taxid": [ "44060" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Unknown" ], "sample_host_location_id": [], "data_size": "1.569 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5850061", "Number of Sequences": "195", "Longest Sequences (bp)": "394857", "N50 (bp)": "155964", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.3", "Number of CDSs": "5317", "Average Protein Length": "316.1", "Coding Ratio (%)": "86.2", "Number of rRNAs": "3", "Number of tRNAs": "78", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces megasporus", "strain": "strain=NRRL B-16372", "accession": "GCA_000718985.1", "taxid": 44060, "species_taxid": 44060, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1899, "total_fragments": 1902, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces radiopugnans", "strain": "strain=CGMCC 4.3519", "accession": "GCA_900110735.1", "taxid": 403935, "species_taxid": 403935, "relation_to_type": "type", "validated": true, "ani": 87.7051, "matched_fragments": 1417, "total_fragments": 1902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces taklimakanensis", "strain": "strain=TRM43335", "accession": "GCA_009709575.1", "taxid": 2569853, "species_taxid": 2569853, "relation_to_type": "type", "validated": true, "ani": 87.3719, "matched_fragments": 1406, "total_fragments": 1902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces barkulensis", "strain": "strain=RC 1831", "accession": "GCA_002843305.1", "taxid": 1257026, "species_taxid": 1257026, "relation_to_type": "type", "validated": true, "ani": 87.3401, "matched_fragments": 1399, "total_fragments": 1902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces barkulensis", "strain": "strain=RC 1831", "accession": "GCA_002811705.2", "taxid": 1257026, "species_taxid": 1257026, "relation_to_type": "type", "validated": true, "ani": 87.3226, "matched_fragments": 1385, "total_fragments": 1902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces pini", "strain": "strain=PL19", "accession": "GCA_900114215.1", "taxid": 1520580, "species_taxid": 1520580, "relation_to_type": "type", "validated": true, "ani": 87.3192, "matched_fragments": 1402, "total_fragments": 1902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces verrucosisporus", "strain": "strain=CPB1-1", "accession": "GCA_017114865.1", "taxid": 1695161, "species_taxid": 1695161, "relation_to_type": "type", "validated": true, "ani": 87.2575, "matched_fragments": 1390, "total_fragments": 1902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces carminius", "strain": "strain=TRM SA0054", "accession": "GCA_002794255.1", "taxid": 2665496, "species_taxid": 2665496, "relation_to_type": "type", "validated": true, "ani": 86.7825, "matched_fragments": 1363, "total_fragments": 1902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces thermodiastaticus", "strain": "strain=DSM 40573", "accession": "GCA_021394575.1", "taxid": 44061, "species_taxid": 44061, "relation_to_type": "type", "validated": true, "ani": 80.9655, "matched_fragments": 991, "total_fragments": 1902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces paromomycinus", "strain": "strain=NBRC 15454", "accession": "GCA_003865155.1", "taxid": 92743, "species_taxid": 92743, "relation_to_type": "type", "validated": true, "ani": 80.9627, "matched_fragments": 1049, "total_fragments": 1902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces oryzae", "strain": "strain=S16-07", "accession": "GCA_017676365.1", "taxid": 1434886, "species_taxid": 1434886, "relation_to_type": "type", "validated": true, "ani": 80.8991, "matched_fragments": 907, "total_fragments": 1902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albireticuli", "strain": "strain=NRRL B1670", "accession": "GCA_021228125.1", "taxid": 1940, "species_taxid": 1940, "relation_to_type": "type", "validated": true, "ani": 80.8842, "matched_fragments": 1005, "total_fragments": 1902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces gobiensis", "strain": "strain=1_25", "accession": "GCA_021216675.1", "taxid": 2875706, "species_taxid": 2875706, "relation_to_type": "type", "validated": true, "ani": 80.8824, "matched_fragments": 917, "total_fragments": 1902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rimosus subsp. rimosus", "strain": "strain=R7", "accession": "GCA_022760195.1", "taxid": 132474, 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