{ "type": "genome", "identifier": "GCF_000719115.1", "organism": "Lentzea albidocapillata", "title": "Lentzea albidocapillata", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Illinois", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000719115.1", "bioproject": "PRJNA224116", "biosample": "SAMN02645224", "wgs_master": "JOEA00000000.1", "refseq_category": "na", "taxid": "40571", "species_taxid": "40571", "organism_name": "Lentzea albidocapillata", "infraspecific_name": "strain=NRRL B-24057", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/02", "asm_name": "ASM71911v1", "asm_submitter": "University of Illinois", "gbrs_paired_asm": "GCA_000719115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/719/115/GCF_000719115.1_ASM71911v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8642480", "genome_size_ungapped": "8642480", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "127", "contig_count": "127", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000719115.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "8347", "protein_coding_gene_count": "8168", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-02", "dateModified": "2014-07-02", "datePublished": "2014-07-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Lentzea albidocapillata" ], "sample_taxid": [ "40571" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "2.342 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8642480", "Number of Sequences": "127", "Longest Sequences (bp)": "705060", "N50 (bp)": "330024", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.7", "Number of CDSs": "8269", "Average Protein Length": "319.5", "Coding Ratio (%)": "91.7", "Number of rRNAs": "3", "Number of tRNAs": "76", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lentzea albidocapillata", "strain": "strain=NRRL B-24057", "accession": "GCA_000719115.1", "taxid": 40571, "species_taxid": 40571, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2838, "total_fragments": 2843, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lentzea albidocapillata", "strain": "strain=DSM 44073", "accession": "GCA_900176525.1", "taxid": 40571, "species_taxid": 40571, "relation_to_type": "type", "validated": true, "ani": 99.9854, "matched_fragments": 2838, "total_fragments": 2843, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lentzea albidocapillata subsp. violacea", "strain": "strain=DSM 44796", "accession": "GCA_900100275.1", "taxid": 128104, "species_taxid": 40571, "relation_to_type": "type", "validated": true, "ani": 96.6933, "matched_fragments": 2381, "total_fragments": 2843, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lentzea flaviverrucosa", "strain": "strain=DSM 44664", "accession": "GCA_003350445.1", "taxid": 200379, "species_taxid": 200379, "relation_to_type": "type", "validated": true, "ani": 94.0362, "matched_fragments": 2321, "total_fragments": 2843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Lentzea", "albidocapillata" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }