{ "type": "genome", "identifier": "GCF_000719175.1", "organism": "Kitasatospora aureofaciens", "title": "Kitasatospora aureofaciens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Illinois", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000719175.1", "bioproject": "PRJNA224116", "biosample": "SAMN02645243", "wgs_master": "JOER00000000.1", "refseq_category": "na", "taxid": "1894", "species_taxid": "1894", "organism_name": "Kitasatospora aureofaciens", "infraspecific_name": "strain=NRRL B-2657", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/02", "asm_name": "ASM71917v1", "asm_submitter": "University of Illinois", "gbrs_paired_asm": "GCA_000719175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/719/175/GCF_000719175.1_ASM71917v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9192027", "genome_size_ungapped": "9192027", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "279", "contig_count": "279", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000719175.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "8383", "protein_coding_gene_count": "7965", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-02", "dateModified": "2014-07-02", "datePublished": "2014-07-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Kitasatospora aureofaciens" ], "sample_taxid": [ "1894" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Missouri" ], "sample_host_location_id": [], "data_size": "2.451 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9192027", "Number of Sequences": "279", "Longest Sequences (bp)": "327683", "N50 (bp)": "121651", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.8", "Number of CDSs": "8293", "Average Protein Length": "311.6", "Coding Ratio (%)": "84.3", "Number of rRNAs": "2", "Number of tRNAs": "97", "Number of CRISPRs": "9" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kitasatospora aureofaciens", "strain": "strain=ATCC 10762", "accession": "GCA_001188955.3", "taxid": 1894, "species_taxid": 1894, "relation_to_type": "type", "validated": true, "ani": 99.968, "matched_fragments": 2913, "total_fragments": 2967, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kitasatospora aureofaciens", "strain": "strain=NRRL 2209", "accession": "GCA_000978515.1", "taxid": 1894, "species_taxid": 1894, "relation_to_type": "type", "validated": true, "ani": 99.7392, "matched_fragments": 2428, "total_fragments": 2967, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces rubellomurinus", "strain": "strain=ATCC 31215", "accession": "GCA_000961885.1", "taxid": 359131, "species_taxid": 359131, "relation_to_type": "type", "validated": true, "ani": 88.6907, "matched_fragments": 1906, "total_fragments": 2967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora purpeofusca", "strain": "strain=NRRL B-1817", "accession": "GCA_000718025.1", "taxid": 67352, "species_taxid": 67352, "relation_to_type": "type", "validated": true, "ani": 85.466, "matched_fragments": 1829, "total_fragments": 2967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora atroaurantiaca", "strain": "strain=DSM 41649", "accession": "GCA_007828955.1", "taxid": 285545, "species_taxid": 285545, "relation_to_type": "type", "validated": true, "ani": 83.7708, "matched_fragments": 1465, "total_fragments": 2967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora paracochleata", "strain": "strain=DSM 41656", "accession": "GCA_024172095.1", "taxid": 58354, "species_taxid": 58354, "relation_to_type": "type", "validated": true, "ani": 83.388, "matched_fragments": 1653, "total_fragments": 2967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora griseola", "strain": "strain=JCM 3339", "accession": "GCA_014648555.1", "taxid": 2064, "species_taxid": 2064, "relation_to_type": "type", "validated": true, "ani": 82.8786, "matched_fragments": 1475, "total_fragments": 2967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora acidiphila", "strain": "strain=MMS16-CNU292", "accession": "GCA_006636205.1", "taxid": 2567942, "species_taxid": 2567942, "relation_to_type": "type", "validated": true, "ani": 82.8022, "matched_fragments": 1474, "total_fragments": 2967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora cheerisanensis", "strain": "strain=KCTC 2395", "accession": "GCA_000696185.1", "taxid": 81942, "species_taxid": 81942, "relation_to_type": "type", "validated": true, "ani": 82.7273, "matched_fragments": 1529, "total_fragments": 2967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora humi", "strain": "strain=RB6PN24", "accession": "GCA_020907985.1", "taxid": 2893891, "species_taxid": 2893891, "relation_to_type": "type", "validated": true, "ani": 82.6757, "matched_fragments": 1443, "total_fragments": 2967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces barringtoniae", "strain": "strain=JA03", "accession": "GCA_020819595.1", "taxid": 2892029, "species_taxid": 2892029, "relation_to_type": "type", "validated": true, "ani": 78.9365, "matched_fragments": 1165, "total_fragments": 2967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces roseirectus", "strain": "strain=CRXT-G-22", "accession": "GCA_014489635.1", "taxid": 2768066, "species_taxid": 2768066, "relation_to_type": "type", "validated": true, "ani": 78.3328, "matched_fragments": 1063, "total_fragments": 2967, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001188955.3", "gtdb_species": "s__Kitasatospora aureofaciens", "ani": 99.968, "matched_fragments": 2913, "total_fragments": 2967, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.54", "min_intra_species_ani": "97.86", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.85", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCF_014596465.1", "gtdb_species": "s__Kitasatospora sp014596465", "ani": 91.0857, "matched_fragments": 2028, "total_fragments": 2967, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015776785.2", "gtdb_species": "s__Kitasatospora sp015776785", "ani": 90.73, "matched_fragments": 1689, "total_fragments": 2967, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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"anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 1.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Kitasatospora", "aureofaciens" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }