{ "type": "genome", "identifier": "GCF_000720335.1", "organism": "Nocardioides aequoreus", "title": "Nocardioides aequoreus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Illinois", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000720335.1", "bioproject": "PRJNA224116", "biosample": "SAMN02645230", "wgs_master": "JOJN00000000.1", "refseq_category": "reference genome", "taxid": "397278", "species_taxid": "397278", "organism_name": "Nocardioides aequoreus", "infraspecific_name": "strain=NRRL B-24464", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/02", "asm_name": "ASM72033v1", "asm_submitter": "University of Illinois", "gbrs_paired_asm": "GCA_000720335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/720/335/GCF_000720335.1_ASM72033v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4163496", "genome_size_ungapped": "4163496", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "43", "contig_count": "43", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000720335.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "4017", "protein_coding_gene_count": "3938", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-02", "dateModified": "2014-07-02", "datePublished": "2014-07-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides aequoreus" ], "sample_taxid": [ "397278" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju Island" ], "sample_host_location_id": [], "data_size": "1.090 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4163496", "Number of Sequences": "43", "Longest Sequences (bp)": "810394", "N50 (bp)": "469778", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.9", "Number of CDSs": "3982", "Average Protein Length": "322.4", "Coding Ratio (%)": "92.5", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marmoricola aequoreus", "strain": "strain=NRRL B-24464", "accession": "GCA_000720335.1", "taxid": 397278, "species_taxid": 397278, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1369, "total_fragments": 1372, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marmoricola scoriae", "strain": "strain=DSM 22127", "accession": "GCA_900104965.1", "taxid": 642780, "species_taxid": 642780, "relation_to_type": "type", "validated": true, "ani": 83.3279, "matched_fragments": 876, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marmoricola aurantiacus", "strain": "strain=DSM 12652", "accession": "GCA_003752505.1", "taxid": 86796, "species_taxid": 86796, "relation_to_type": "type", "validated": true, "ani": 83.2718, "matched_fragments": 856, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides kribbensis", "strain": "strain=DSM 16314", "accession": "GCA_015070375.1", "taxid": 305517, "species_taxid": 305517, "relation_to_type": "type", "validated": true, "ani": 80.6943, "matched_fragments": 721, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 80.6041, "matched_fragments": 663, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides perillae", "strain": "strain=DSM 24552", "accession": "GCA_013409425.1", "taxid": 1119534, "species_taxid": 1119534, "relation_to_type": "type", "validated": true, "ani": 80.511, "matched_fragments": 693, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panaciterrulae", "strain": "strain=DSM 21350", "accession": "GCA_013409645.1", "taxid": 661492, "species_taxid": 661492, "relation_to_type": "type", "validated": true, "ani": 80.1806, "matched_fragments": 654, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides 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