{
    "type": "genome",
    "identifier": "GCF_000720835.1",
    "organism": "Streptomyces achromogenes subsp. achromogenes",
    "title": "Streptomyces achromogenes subsp. achromogenes",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Illinois",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000720835.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02645217",
        "wgs_master": "JODT00000000.1",
        "refseq_category": "na",
        "taxid": "67256",
        "species_taxid": "67255",
        "organism_name": "Streptomyces achromogenes subsp. achromogenes",
        "infraspecific_name": "strain=NRRL B-2120",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/07/02",
        "asm_name": "ASM72083v1",
        "asm_submitter": "University of Illinois",
        "gbrs_paired_asm": "GCA_000720835.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/720/835/GCF_000720835.1_ASM72083v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8112410",
        "genome_size_ungapped": "8112410",
        "gc_percent": "72.500000",
        "replicon_count": "0",
        "scaffold_count": "163",
        "contig_count": "163",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000720835.1-RS_2024_12_22",
        "annotation_date": "2024-12-22",
        "total_gene_count": "7408",
        "protein_coding_gene_count": "7110",
        "non_coding_gene_count": "83",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-07-02",
    "dateModified": "2014-07-02",
    "datePublished": "2014-07-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces achromogenes subsp. achromogenes"
        ],
        "sample_taxid": [
            "67256"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan: Suginami, Tokyo"
        ],
        "sample_host_location_id": [],
        "data_size": "2.170 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 5.21,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8112410",
        "Number of Sequences": "163",
        "Longest Sequences (bp)": "388890",
        "N50 (bp)": "185677",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "72.5",
        "Number of CDSs": "7311",
        "Average Protein Length": "323.1",
        "Coding Ratio (%)": "87.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "91",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptomyces achromogenes subsp. achromogenes",
                "strain": "strain=NRRL B-2120",
                "accession": "GCA_000720835.1",
                "taxid": 67256,
                "species_taxid": 67255,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2648,
                "total_fragments": 2654,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Streptomyces lavenduligriseus",
                "strain": "strain=NRRL ISP-5487",
                "accession": "GCA_000718625.1",
                "taxid": 67315,
                "species_taxid": 67315,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.308,
                "matched_fragments": 2310,
                "total_fragments": 2654,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Streptomyces eurythermus",
                "strain": "strain=JCM 4206",
                "accession": "GCA_014649115.1",
                "taxid": 42237,
                "species_taxid": 42237,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.255,
                "matched_fragments": 2342,
                "total_fragments": 2654,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Streptomyces rubradiris",
                "strain": "strain=NBRC 14000",
                "accession": "GCA_016860525.1",
                "taxid": 285531,
                "species_taxid": 285531,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.7817,
                "matched_fragments": 2219,
                "total_fragments": 2654,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces rubradiris",
                "strain": "strain=JCM 4955",
                "accession": "GCA_014656255.1",
                "taxid": 285531,
                "species_taxid": 285531,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.761,
                "matched_fragments": 2205,
                "total_fragments": 2654,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces spinosus",
                "strain": "strain=SBTS01",
                "accession": "GCA_020400655.1",
                "taxid": 2872623,
                "species_taxid": 2872623,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.1767,
                "matched_fragments": 1920,
                "total_fragments": 2654,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces barringtoniae",
                "strain": "strain=JA03",
                "accession": "GCA_020819595.1",
                "taxid": 2892029,
                "species_taxid": 2892029,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.4958,
                "matched_fragments": 1766,
                "total_fragments": 2654,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces sennicomposti",
                "strain": "strain=RCPT1-4",
                "accession": "GCA_019890635.1",
                "taxid": 2873384,
                "species_taxid": 2873384,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4446,
                "matched_fragments": 1528,
                "total_fragments": 2654,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces shenzhenensis subsp. oryzicola",
                "strain": "strain=W18L9",
                "accession": "GCA_013870495.1",
                "taxid": 2749088,
                "species_taxid": 943815,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.0259,
                "matched_fragments": 1322,
                "total_fragments": 2654,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces shenzhenensis",
                "strain": "strain=DSM 42034",
                "accession": "GCA_021462265.1",
                "taxid": 943815,
                "species_taxid": 943815,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.8514,
                "matched_fragments": 1697,
                "total_fragments": 2654,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 5.21,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000720835.1",
                "gtdb_species": "s__Streptomyces achromogenes",
                "ani": 100.0,
                "matched_fragments": 2648,
                "total_fragments": 2654,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.2781,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014649115.1",
                "gtdb_species": "s__Streptomyces eurythermus",
                "ani": 95.2373,
                "matched_fragments": 2344,
                "total_fragments": 2654,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.2781,
                "mean_intra_species_ani": "97.90",
                "min_intra_species_ani": "96.79",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_016860525.1",
                "gtdb_species": "s__Streptomyces rubradiris",
                "ani": 94.7799,
                "matched_fragments": 2219,
                "total_fragments": 2654,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.184,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002155905.1",
                "gtdb_species": "s__Streptomyces tricolor",
                "ani": 89.5341,
                "matched_fragments": 1621,
                "total_fragments": 2654,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.81",
                "min_intra_species_ani": "98.00",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_014648635.1",
                "gtdb_species": "s__Streptomyces cinerochromogenes",
                "ani": 89.5132,
                "matched_fragments": 1971,
                "total_fragments": 2654,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017526105.1",
                "gtdb_species": "s__Streptomyces cyanogenus",
                "ani": 89.4763,
                "matched_fragments": 1856,
                "total_fragments": 2654,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000716535.1",
                "gtdb_species": "s__Streptomyces flaveolus_A",
                "ani": 89.4635,
                "matched_fragments": 1934,
                "total_fragments": 2654,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.26",
                "min_intra_species_ani": "98.84",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_014650115.1",
                "gtdb_species": "s__Streptomyces olivaceoviridis",
                "ani": 89.2679,
                "matched_fragments": 1943,
                "total_fragments": 2654,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.78",
                "min_intra_species_ani": "96.54",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_016741855.1",
                "gtdb_species": "s__Streptomyces musisoli",
                "ani": 89.2669,
                "matched_fragments": 1920,
                "total_fragments": 2654,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009604455.1",
                "gtdb_species": "s__Streptomyces sp009604455",
                "ani": 87.6078,
                "matched_fragments": 1794,
                "total_fragments": 2654,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001735805.1",
                "gtdb_species": "s__Streptomyces fodineus",
                "ani": 87.3809,
                "matched_fragments": 1773,
                "total_fragments": 2654,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001514215.1",
                "gtdb_species": "s__Streptomyces bungoensis",
                "ani": 86.9675,
                "matched_fragments": 1715,
                "total_fragments": 2654,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.201,
        "cell_length": -0.05,
        "doubling_h": 0.103,
        "growth_tmp": 28.0,
        "optimum_tmp": 29.036,
        "optimum_ph": 7.341,
        "genome_size": 8112410.0,
        "gc_content": 71.543,
        "coding_genes": 7141.289,
        "rRNA16S_genes": 6.155,
        "tRNA_genes": 67.804,
        "gram_stain": 1.0,
        "sporulation": 0.958,
        "motility": 0.049,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.005,
        "aerobic_respiration": 0.994,
        "mesophilic_range_tmp": 0.98,
        "thermophilic_range_tmp": 0.019,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.208,
        "coccus_cell_shape": 0.032,
        "filament_cell_shape": 0.582,
        "coccobacillus_cell_shape": 0.098,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.076
    },
    "_genome_taxon": [
        "Streptomyces",
        "achromogenes",
        "subsp.",
        "achromogenes"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}