{ "type": "genome", "identifier": "GCF_000722545.1", "organism": "Paenibacillus tyrfis", "title": "Paenibacillus tyrfis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Monash University Malaysia", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000722545.1", "bioproject": "PRJNA224116", "biosample": "SAMN02769511", "wgs_master": "JNVM00000000.1", "refseq_category": "reference genome", "taxid": "1501230", "species_taxid": "1501230", "organism_name": "Paenibacillus tyrfis", "infraspecific_name": "strain=MSt1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/07", "asm_name": "ASM72254v1", "asm_submitter": "Monash University Malaysia", "gbrs_paired_asm": "GCA_000722545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/722/545/GCF_000722545.1_ASM72254v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8033195", "genome_size_ungapped": "8033195", "gc_percent": "53.000000", "replicon_count": "0", "scaffold_count": "100", "contig_count": "100", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000722545.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "7405", "protein_coding_gene_count": "7160", "non_coding_gene_count": "107", "pubmed_id": "25301658" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-07", "dateModified": "2014-07-07", "datePublished": "2014-07-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus tyrfis" ], "sample_taxid": [ "1501230" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Malaysia: Selangor" ], "sample_host_location_id": [], "data_size": "2.281 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8033195", "Number of Sequences": "100", "Longest Sequences (bp)": "595574", "N50 (bp)": "215818", "Gap Ratio (%)": "0.000199", "GCcontent (%)": "53.0", "Number of CDSs": "7358", "Average Protein Length": "314.5", "Coding Ratio (%)": "86.4", "Number of rRNAs": "9", "Number of tRNAs": "92", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus tyrfis", "strain": "strain=MSt1", "accession": "GCA_000722545.1", "taxid": 1501230, "species_taxid": 1501230, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2633, "total_fragments": 2636, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus elgii", "strain": "strain=NBRC 100335", "accession": "GCA_004000865.1", "taxid": 189691, "species_taxid": 189691, "relation_to_type": "type", "validated": true, "ani": 93.8185, "matched_fragments": 2127, "total_fragments": 2636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus tianmuensis", "strain": "strain=CGMCC 1.8946", "accession": "GCA_900100345.1", "taxid": 624147, "species_taxid": 624147, "relation_to_type": "type", "validated": true, "ani": 91.5049, "matched_fragments": 1601, "total_fragments": 2636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus ehimensis", "strain": "strain=NBRC 15659", "accession": "GCA_004000785.1", "taxid": 79264, "species_taxid": 79264, "relation_to_type": "type", "validated": true, "ani": 90.9609, "matched_fragments": 1862, "total_fragments": 2636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus allorhizosphaerae", "strain": "strain=CIP 111802", "accession": "GCA_910594985.1", "taxid": 2849866, "species_taxid": 2849866, "relation_to_type": "type", "validated": true, "ani": 78.7254, "matched_fragments": 491, "total_fragments": 2636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus validus", "strain": "strain=NBRC 15382", "accession": "GCA_004000985.1", "taxid": 44253, "species_taxid": 44253, "relation_to_type": "type", "validated": true, "ani": 78.657, "matched_fragments": 450, "total_fragments": 2636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus naphthalenovorans", "strain": "strain=PR-N1", "accession": "GCA_900099895.1", "taxid": 162209, "species_taxid": 162209, "relation_to_type": "type", "validated": true, "ani": 78.331, "matched_fragments": 404, "total_fragments": 2636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus puerhi", "strain": "strain=SJY2", "accession": "GCA_009846885.1", "taxid": 2692622, "species_taxid": 2692622, "relation_to_type": "type", "validated": true, "ani": 78.1694, "matched_fragments": 378, "total_fragments": 2636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus ginsengihumi", "strain": "strain=DSM 21568", "accession": "GCA_000380965.1", "taxid": 431596, "species_taxid": 431596, "relation_to_type": "type", "validated": true, "ani": 77.9018, "matched_fragments": 390, "total_fragments": 2636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus doosanensis", "strain": "strain=CAU 1055", "accession": "GCA_025060755.1", "taxid": 1229154, "species_taxid": 1229154, "relation_to_type": "type", "validated": true, "ani": 77.7079, "matched_fragments": 447, "total_fragments": 2636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus darwinianus", "strain": "strain=Br", "accession": 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