{ "type": "genome", "identifier": "GCF_000722635.1", "organism": "Endozoicomonas numazuensis", "title": "Endozoicomonas numazuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Woods Hole Oceanographic Institution", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000722635.1", "bioproject": "PRJNA224116", "biosample": "SAMN02851612", "wgs_master": "JOKH00000000.1", "refseq_category": "reference genome", "taxid": "1137799", "species_taxid": "1137799", "organism_name": "Endozoicomonas numazuensis", "infraspecific_name": "strain=DSM 25634", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/07", "asm_name": "ASM72263v1", "asm_submitter": "Woods Hole Oceanographic Institution", "gbrs_paired_asm": "GCA_000722635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/722/635/GCF_000722635.1_ASM72263v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6342227", "genome_size_ungapped": "6053898", "gc_percent": "47.000000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000722635.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "5426", "protein_coding_gene_count": "5217", "non_coding_gene_count": "104", "pubmed_id": "25125646" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-07", "dateModified": "2014-07-07", "datePublished": "2014-07-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Endozoicomonas numazuensis" ], "sample_taxid": [ "1137799" ], "sample_host_organism": [ "Haliclona 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002864045.1", "gtdb_species": "s__Endozoicomonas acroporae", "ani": 77.3727, "matched_fragments": 167, "total_fragments": 2099, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Endozoicomonadaceae;g__Endozoicomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.93", "min_intra_species_ani": "98.92", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001647025.1", "gtdb_species": "s__Endozoicomonas atrinae", "ani": 77.3615, "matched_fragments": 184, "total_fragments": 2099, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Endozoicomonadaceae;g__Endozoicomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.812, "doubling_h": null, "growth_tmp": 25.0, "optimum_tmp": 25.0, "optimum_ph": 7.5, "genome_size": 6342227.0, "gc_content": 47.101, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Endozoicomonas", "numazuensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }