{ "type": "genome", "identifier": "GCF_000723385.1", "organism": "Mycolicibacterium farcinogenes", "title": "Mycolicibacterium farcinogenes", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000723385.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3139027", "wgs_master": "CCAY000000000.1", "refseq_category": "na", "taxid": "1802", "species_taxid": "1802", "organism_name": "Mycolicibacterium farcinogenes", "infraspecific_name": "strain=DSM 43637", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/05/12", "asm_name": "PRJEB5746_assembly_1", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_000723385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/723/385/GCF_000723385.1_PRJEB5746_assembly_1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6139893", "genome_size_ungapped": "6062162", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "63", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000723385.1-RS_2024_07_07", "annotation_date": "2024-07-07", "total_gene_count": "5859", "protein_coding_gene_count": "5687", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-05-12", "dateModified": "2014-05-12", "datePublished": "2014-05-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium farcinogenes" ], "sample_taxid": [ "1802" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], 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"below_threshold" }, { "organism_name": "Mycolicibacterium neworleansense", "strain": "strain=type strain: ATCC 49404", "accession": "GCA_001245615.1", "taxid": 146018, "species_taxid": 146018, "relation_to_type": "type", "validated": true, "ani": 87.4537, "matched_fragments": 1706, "total_fragments": 2043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium nivoides", "strain": "strain=DL90", "accession": "GCA_003855255.1", "taxid": 2487344, "species_taxid": 2487344, "relation_to_type": "type", "validated": true, "ani": 87.4328, "matched_fragments": 1657, "total_fragments": 2043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=JCM 6387", "accession": "GCA_022179545.1", "taxid": 144549, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 87.2682, "matched_fragments": 1658, "total_fragments": 2043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. acetamidolyticum", "strain": "strain=JCM6368", "accession": "GCA_001570465.1", "taxid": 144550, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 87.2661, "matched_fragments": 1620, "total_fragments": 2043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=DSM 46621", "accession": "GCA_000295855.1", "taxid": 144549, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 87.2301, "matched_fragments": 1640, "total_fragments": 2043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium alvei", "strain": "strain=JCM 12272", "accession": "GCA_010727325.1", "taxid": 67081, "species_taxid": 67081, "relation_to_type": "type", "validated": true, "ani": 86.0097, "matched_fragments": 1422, "total_fragments": 2043, "ani_threshold": 95, "status": 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