{ "type": "genome", "identifier": "GCF_000730565.1", "organism": "Pseudomonas fulva NBRC 16637 = DSM 17717", "title": "Pseudomonas fulva NBRC 16637 = DSM 17717", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000730565.1", "bioproject": "PRJNA224116", "biosample": "SAMD00018425", "wgs_master": "BBIQ00000000.1", "refseq_category": "na", "taxid": "1215102", "species_taxid": "47880", "organism_name": "Pseudomonas fulva NBRC 16637 = DSM 17717", "infraspecific_name": "strain=NBRC 16637", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/10", "asm_name": "ASM73056v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000730565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/730/565/GCF_000730565.1_ASM73056v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4768229", "genome_size_ungapped": "4768229", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "46", "contig_count": "46", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000730565.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "4356", "protein_coding_gene_count": "4225", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-10", "dateModified": "2014-07-10", "datePublished": "2014-07-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas fulva NBRC 16637 = DSM 17717" ], "sample_taxid": [ "1215102" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.336 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4768229", "Number of Sequences": "46", "Longest Sequences (bp)": "562887", "N50 (bp)": "190636", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.8", "Number of CDSs": "4273", "Average Protein Length": "330.9", "Coding Ratio (%)": "89.0", "Number of rRNAs": "6", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas fulva", "strain": "strain=NBRC 16637", "accession": "GCA_000730565.1", "taxid": 47880, "species_taxid": 47880, "relation_to_type": 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"status": "below_threshold" }, { "organism_name": "Pseudomonas monteilii", "strain": "strain=NBRC 103158", "accession": "GCA_000730605.1", "taxid": 76759, "species_taxid": 76759, "relation_to_type": "type", "validated": true, "ani": 84.285, "matched_fragments": 1105, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas putida", "strain": "strain=ATCC 12633", "accession": "GCA_024508115.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 84.2844, "matched_fragments": 1151, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas putida", "strain": "strain=NBRC 14164", "accession": "GCA_000412675.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 84.282, "matched_fragments": 1152, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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