{ "type": "genome", "identifier": "GCF_000730625.1", "organism": "Pseudomonas oryzihabitans NBRC 102199", "title": "Pseudomonas oryzihabitans NBRC 102199", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000730625.1", "bioproject": "PRJNA224116", "biosample": "SAMD00018430", "wgs_master": "BBIT00000000.1", "refseq_category": "na", "taxid": "1215113", "species_taxid": "47885", "organism_name": "Pseudomonas oryzihabitans NBRC 102199", "infraspecific_name": "strain=NBRC 102199", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/10", "asm_name": "ASM73062v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000730625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/730/625/GCF_000730625.1_ASM73062v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5027590", "genome_size_ungapped": "5027590", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-08-06", "total_gene_count": "4689", "protein_coding_gene_count": "4594", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-10", "dateModified": "2014-07-10", "datePublished": "2014-07-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas oryzihabitans NBRC 102199" ], "sample_taxid": [ "1215113" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.376 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5027590", "Number of Sequences": "34", "Longest Sequences (bp)": "953810", "N50 (bp)": "433363", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.2", "Number of CDSs": "4645", "Average Protein Length": "324.8", "Coding Ratio (%)": "90.0", "Number of rRNAs": "2", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas oryzihabitans", "strain": "strain=NBRC 102199", "accession": "GCA_000730625.1", "taxid": 47885, 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