{ "type": "genome", "identifier": "GCF_000730665.1", "organism": "Pseudomonas plecoglossicida NBRC 103162 = DSM 15088", "title": "Pseudomonas plecoglossicida NBRC 103162 = DSM 15088", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000730665.1", "bioproject": "PRJNA224116", "biosample": "SAMD00018427", "wgs_master": "BBIV00000000.1", "refseq_category": "na", "taxid": "1215115", "species_taxid": "70775", "organism_name": "Pseudomonas plecoglossicida NBRC 103162 = DSM 15088", "infraspecific_name": "strain=NBRC 103162", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/10", "asm_name": "ASM73066v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000730665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/730/665/GCF_000730665.1_ASM73066v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5341796", "genome_size_ungapped": "5341796", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "97", "contig_count": "97", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-08-06", "total_gene_count": "4954", "protein_coding_gene_count": "4728", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-10", "dateModified": "2014-07-10", "datePublished": "2014-07-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas plecoglossicida NBRC 103162 = DSM 15088" ], "sample_taxid": [ "1215115" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Tokushima" ], "sample_host_location_id": [], "data_size": "1.488 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5341796", "Number of Sequences": "97", "Longest Sequences (bp)": "308481", "N50 (bp)": "109902", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.0", "Number of CDSs": "4886", "Average Protein Length": "325.2", "Coding Ratio (%)": "89.2", "Number of rRNAs": "4", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas plecoglossicida", "strain": "strain=NBRC 103162", "accession": "GCA_000730665.1", "taxid": 70775, "species_taxid": 70775, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1729, "total_fragments": 1733, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas plecoglossicida", "strain": "strain=DSM 15088", "accession": "GCA_000688275.1", "taxid": 70775, "species_taxid": 70775, "relation_to_type": "suspected-type", "validated": true, "ani": 99.993, "matched_fragments": 1721, "total_fragments": 1733, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 90.6206, "matched_fragments": 1365, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, 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"matched_fragments": 1262, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kermanshahensis", "strain": "strain=SWRI100", "accession": "GCA_014269205.2", "taxid": 2745482, "species_taxid": 2745482, "relation_to_type": "type", "validated": true, "ani": 87.0249, "matched_fragments": 1328, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas xantholysinigenes", "strain": "strain=RW9S1A", "accession": "GCA_014268885.2", "taxid": 2745490, "species_taxid": 2745490, "relation_to_type": "type", "validated": true, "ani": 86.8491, "matched_fragments": 1238, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000730665.1", "gtdb_species": "s__Pseudomonas_E plecoglossicida", "ani": 100.0, "matched_fragments": 1729, 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