{ "type": "genome", "identifier": "GCF_000731985.1", "organism": "Natrinema altunense", "title": "Natrinema altunense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000731985.1", "bioproject": "PRJNA224116", "biosample": "SAMN02800870", "wgs_master": "JNCS00000000.1", "refseq_category": "reference genome", "taxid": "222984", "species_taxid": "222984", "organism_name": "Natrinema altunense", "infraspecific_name": "strain=AJ2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/21", "asm_name": "ASM73198v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_000731985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/731/985/GCF_000731985.1_ASM73198v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "3774135", "genome_size_ungapped": "3774135", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000731985.1-RS_2024_10_21", "annotation_date": "2024-10-21", "total_gene_count": "3826", "protein_coding_gene_count": "3698", "non_coding_gene_count": "58", "pubmed_id": "15879273" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-21", "dateModified": "2014-07-21", "datePublished": "2014-07-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Natrinema altunense" ], "sample_taxid": [ "222984" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xinjiang" ], "sample_host_location_id": [], "data_size": "1.037 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3774135", "Number of Sequences": "20", "Longest Sequences (bp)": "837556", "N50 (bp)": "425349", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.6", "Number of CDSs": "3708", "Average Protein Length": "284.4", "Coding Ratio (%)": "83.8", "Number of rRNAs": "4", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Natrinema altunense", "strain": "strain=AJ2", "accession": "GCA_000731985.1", "taxid": 222984, "species_taxid": 222984, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1248, "total_fragments": 1248, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Natrinema altunense", "strain": "strain=JCM 12890", "accession": "GCA_000337155.1", "taxid": 222984, "species_taxid": 222984, "relation_to_type": "type", "validated": true, "ani": 99.966, "matched_fragments": 1222, "total_fragments": 1248, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Natrinema pallidum", "strain": "strain=DSM 3751", "accession": "GCA_000337615.1", "taxid": 69527, "species_taxid": 69527, "relation_to_type": "type", "validated": true, "ani": 93.5239, "matched_fragments": 1021, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natrinema gari", "strain": "strain=JCM 14663", "accession": "GCA_000337175.1", "taxid": 419186, "species_taxid": 419186, "relation_to_type": "type", "validated": true, "ani": 93.2217, "matched_fragments": 1036, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natrinema amylolyticum", "strain": "strain=LT61", "accession": "GCA_020515625.1", "taxid": 2878679, "species_taxid": 2878679, "relation_to_type": "type", "validated": true, "ani": 87.5704, "matched_fragments": 964, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronorubrum sulfidifaciens", "strain": "strain=JCM 14089", "accession": "GCA_000337735.1", "taxid": 388259, "species_taxid": 388259, "relation_to_type": "type", "validated": true, "ani": 80.6064, "matched_fragments": 615, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000731985.1", "gtdb_species": "s__Natrinema altunense", "ani": 100.0, "matched_fragments": 1248, "total_fragments": 1248, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.98", "min_intra_species_ani": "98.00", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_000337615.1", "gtdb_species": "s__Natrinema pallidum", "ani": 93.5404, "matched_fragments": 1020, "total_fragments": 1248, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.94", "min_intra_species_ani": "98.94", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000337175.1", "gtdb_species": "s__Natrinema gari", "ani": 93.2483, "matched_fragments": 1034, "total_fragments": 1248, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.50", 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1, "status": "-" }, { "accession": "GCF_013342135.1", "gtdb_species": "s__Haloterrigena sp013342135", "ani": 82.4505, "matched_fragments": 808, "total_fragments": 1248, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Haloterrigena", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.13", "min_intra_species_ani": "99.13", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000337735.1", "gtdb_species": "s__Natronorubrum sulfidifaciens", "ani": 80.6127, "matched_fragments": 614, "total_fragments": 1248, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronorubrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": 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