{ "type": "genome", "identifier": "GCF_000732905.1", "organism": "Weissella tructae", "title": "Weissella tructae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Aquacen - National Reference Laboratory for Aquatic Animal Diseases, Brazilian Ministry of Fisheries and Aquaculture and Laboratory of Cellular and Molecular Genetics, Federal University of Minas Gerais", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000732905.1", "bioproject": "PRJNA224116", "biosample": "SAMN02716090", "wgs_master": "na", "refseq_category": "na", "taxid": "887702", "species_taxid": "887702", "organism_name": "Weissella tructae", "infraspecific_name": "strain=WS08", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/24", "asm_name": "ASM73290v1", "asm_submitter": "Aquacen - National Reference Laboratory for Aquatic Animal Diseases, Brazilian Ministry of Fisheries and Aquaculture and Laboratory of Cellular and Molecular Genetics, Federal University of Minas Gerais", "gbrs_paired_asm": "GCA_000732905.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/732/905/GCF_000732905.1_ASM73290v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1355853", "genome_size_ungapped": "1355853", "gc_percent": "41.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-03", "total_gene_count": "1359", "protein_coding_gene_count": "1258", "non_coding_gene_count": "97", "pubmed_id": "25146147" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-24", "dateModified": "2014-07-24", "datePublished": "2014-07-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Weissella tructae" ], "sample_taxid": [ "887702" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil" ], "sample_host_location_id": [], "data_size": "0.381 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1355853", "Number of Sequences": "1", "Longest Sequences (bp)": "1355853", "N50 (bp)": "1355853", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.8", "Number of CDSs": "1280", "Average Protein Length": "305.9", "Coding Ratio (%)": "86.6", "Number of rRNAs": "19", "Number of tRNAs": "73", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Weissella ceti", "strain": "strain=CECT 7719", "accession": "GCA_018394055.1", "taxid": 759620, "species_taxid": 759620, "relation_to_type": "suspected-type", "validated": true, "ani": 83.9877, "matched_fragments": 323, "total_fragments": 451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella jogaejeotgali", "strain": "strain=FOL01", "accession": "GCA_001932615.1", "taxid": 1631871, "species_taxid": 1631871, "relation_to_type": "type", "validated": true, "ani": 80.3852, "matched_fragments": 75, "total_fragments": 451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella coleopterorum", "strain": "strain=HDW19", "accession": "GCA_011304355.1", "taxid": 2714949, "species_taxid": 2714949, "relation_to_type": "type", "validated": true, "ani": 79.9876, "matched_fragments": 57, "total_fragments": 451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella viridescens", "strain": "strain=NCTC13645", "accession": "GCA_900460455.1", "taxid": 1629, "species_taxid": 1629, "relation_to_type": "type", "validated": true, "ani": 79.9452, "matched_fragments": 108, "total_fragments": 451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella viridescens", "strain": "strain=NCDO 1655", "accession": "GCA_001460875.1", "taxid": 1629, "species_taxid": 1629, "relation_to_type": "type", "validated": true, "ani": 79.5629, "matched_fragments": 94, "total_fragments": 451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella viridescens", "strain": "strain=DSM 20410", "accession": "GCA_001437355.1", "taxid": 1629, "species_taxid": 1629, "relation_to_type": "type", "validated": true, "ani": 79.3845, "matched_fragments": 109, "total_fragments": 451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella cibaria", "strain": "strain=JCM 12495", 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