{ "type": "genome", "identifier": "GCF_000732945.1", "organism": "Corynebacterium atypicum", "title": "Corynebacterium atypicum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bielefeld University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000732945.1", "bioproject": "PRJNA224116", "biosample": "SAMN02911287", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "191610", "species_taxid": "191610", "organism_name": "Corynebacterium atypicum", "infraspecific_name": "strain=R2070", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/24", "asm_name": "ASM73294v1", "asm_submitter": "Bielefeld University", "gbrs_paired_asm": "GCA_000732945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/732/945/GCF_000732945.1_ASM73294v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2359448", "genome_size_ungapped": "2359448", "gc_percent": "65.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000732945.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2175", "protein_coding_gene_count": "2007", "non_coding_gene_count": "66", "pubmed_id": "25146145" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-24", "dateModified": "2014-07-24", "datePublished": "2014-07-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium atypicum" ], "sample_taxid": [ "191610" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Wales, Cardiff" ], "sample_host_location_id": [], "data_size": "0.658 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2359448", "Number of Sequences": "2", "Longest Sequences (bp)": "2311380", "N50 (bp)": "2311380", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.4", "Number of CDSs": "2185", "Average Protein Length": "321.0", "Coding Ratio (%)": "89.2", "Number of rRNAs": "12", "Number of tRNAs": "54", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium atypicum", "strain": "strain=R2070", "accession": "GCA_000732945.1", "taxid": 191610, "species_taxid": 191610, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 779, "total_fragments": 786, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium frankenforstense", "strain": "strain=ST18", "accession": "GCA_001941485.1", "taxid": 1230998, "species_taxid": 1230998, "relation_to_type": "type", "validated": true, "ani": 80.1513, "matched_fragments": 459, "total_fragments": 786, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium uberis", "strain": "strain=18M0132", "accession": "GCA_020616335.1", "taxid": 2883169, "species_taxid": 2883169, "relation_to_type": "type", "validated": true, "ani": 78.5361, "matched_fragments": 241, "total_fragments": 786, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium mastitidis", "strain": "strain=DSM 44356", "accession": "GCA_000375365.1", "taxid": 161890, "species_taxid": 161890, "relation_to_type": "type", "validated": true, "ani": 78.3037, "matched_fragments": 248, "total_fragments": 786, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium humireducens", "strain": "strain=DSM 45392", "accession": "GCA_000819445.1", "taxid": 1223514, "species_taxid": 1223514, "relation_to_type": "type", "validated": true, "ani": 78.2408, "matched_fragments": 241, "total_fragments": 786, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium vitaeruminis", "strain": "strain=DSM 20294", "accession": "GCA_000550805.1", "taxid": 38305, "species_taxid": 38305, "relation_to_type": "type", "validated": true, "ani": 78.1753, "matched_fragments": 257, "total_fragments": 786, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium otitidis", "strain": "strain=ATCC 51513", "accession": "GCA_000296405.1", "taxid": 29321, "species_taxid": 29321, "relation_to_type": "type", "validated": true, "ani": 78.0582, "matched_fragments": 218, "total_fragments": 786, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium otitidis", "strain": "strain=ATCC 51513", "accession": "GCA_000297795.2", "taxid": 29321, "species_taxid": 29321, "relation_to_type": "type", "validated": true, "ani": 78.0254, "matched_fragments": 217, "total_fragments": 786, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium yudongzhengii", "strain": "strain=2183", "accession": "GCA_003065405.1", "taxid": 2080740, "species_taxid": 2080740, "relation_to_type": "type", "validated": true, "ani": 77.9007, "matched_fragments": 203, "total_fragments": 786, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium halotolerans", "strain": "strain=YIM 70093 = DSM 44683", "accession": "GCA_000341345.1", "taxid": 225326, "species_taxid": 225326, "relation_to_type": "type", "validated": true, "ani": 77.8466, "matched_fragments": 276, "total_fragments": 786, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium humireducens", "strain": "strain=NBRC 106098", "accession": "GCA_001571025.1", "taxid": 1223514, "species_taxid": 1223514, "relation_to_type": "type", "validated": true, "ani": 77.7994, "matched_fragments": 235, "total_fragments": 786, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium halotolerans", "strain": "strain=DSM 44683", "accession": "GCA_000688435.1", "taxid": 225326, "species_taxid": 225326, "relation_to_type": "type", "validated": true, "ani": 77.6, "matched_fragments": 261, "total_fragments": 786, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium zhongnanshanii", "strain": "strain=zg-320", "accession": "GCA_014490575.1", "taxid": 2768834, "species_taxid": 2768834, "relation_to_type": "type", "validated": true, "ani": 77.1471, "matched_fragments": 74, "total_fragments": 786, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix algeriensis", "strain": "strain=DSM 44581", "accession": "GCA_016907655.1", "taxid": 173560, "species_taxid": 173560, "relation_to_type": "type", "validated": true, "ani": 76.4284, "matched_fragments": 131, "total_fragments": 786, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia vulneris", "strain": "strain=NBRC 108936", "accession": "GCA_001613425.1", "taxid": 1141657, "species_taxid": 1141657, "relation_to_type": "type", "validated": true, "ani": 76.2665, "matched_fragments": 109, "total_fragments": 786, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000732945.1", "gtdb_species": "s__Corynebacterium atypicum", "ani": 100.0, "matched_fragments": 781, "total_fragments": 786, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, 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