{
    "type": "genome",
    "identifier": "GCF_000733475.1",
    "organism": "Mangrovimonas yunxiaonensis",
    "title": "Mangrovimonas yunxiaonensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "School of Life Sciences, Xiamen University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000733475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02903170",
        "wgs_master": "JPFK00000000.1",
        "refseq_category": "na",
        "taxid": "1197477",
        "species_taxid": "1197477",
        "organism_name": "Mangrovimonas yunxiaonensis",
        "infraspecific_name": "strain=LY01",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/07/25",
        "asm_name": "ASM73347v1",
        "asm_submitter": "School of Life Sciences, Xiamen University",
        "gbrs_paired_asm": "GCA_000733475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/733/475/GCF_000733475.1_ASM73347v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2670033",
        "genome_size_ungapped": "2670033",
        "gc_percent": "39.000000",
        "replicon_count": "0",
        "scaffold_count": "11",
        "contig_count": "11",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000733475.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "2470",
        "protein_coding_gene_count": "2404",
        "non_coding_gene_count": "53",
        "pubmed_id": "25428978"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-07-25",
    "dateModified": "2014-07-25",
    "datePublished": "2014-07-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mangrovimonas yunxiaonensis"
        ],
        "sample_taxid": [
            "1197477"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Xiamen, Fujian"
        ],
        "sample_host_location_id": [],
        "data_size": "0.748 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 28.0,
            "max": 28.0
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2670033",
        "Number of Sequences": "11",
        "Longest Sequences (bp)": "775861",
        "N50 (bp)": "708129",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.2",
        "Number of CDSs": "2397",
        "Average Protein Length": "335.7",
        "Coding Ratio (%)": "90.4",
        "Number of rRNAs": "8",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Mangrovimonas yunxiaonensis",
                "strain": "strain=LY01",
                "accession": "GCA_000733475.1",
                "taxid": 1197477,
                "species_taxid": 1197477,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 883,
                "total_fragments": 885,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mangrovimonas yunxiaonensis",
                "strain": "strain=CGMCC 1.12280",
                "accession": "GCA_014636995.1",
                "taxid": 1197477,
                "species_taxid": 1197477,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9942,
                "matched_fragments": 869,
                "total_fragments": 885,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mangrovimonas spongiae",
                "strain": "strain=HN-E26",
                "accession": "GCA_003944795.1",
                "taxid": 2494697,
                "species_taxid": 2494697,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7403,
                "matched_fragments": 479,
                "total_fragments": 885,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Seonamhaeicola algicola",
                "strain": "strain=Gy8",
                "accession": "GCA_007997385.1",
                "taxid": 1719036,
                "species_taxid": 1719036,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2129,
                "matched_fragments": 169,
                "total_fragments": 885,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hanstruepera marina",
                "strain": "strain=NBU2968",
                "accession": "GCA_019880635.1",
                "taxid": 2873265,
                "species_taxid": 2873265,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2049,
                "matched_fragments": 208,
                "total_fragments": 885,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomarina gelatinilytica",
                "strain": "strain=AK20",
                "accession": "GCA_000348685.1",
                "taxid": 1137281,
                "species_taxid": 1137281,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6941,
                "matched_fragments": 243,
                "total_fragments": 885,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Formosa haliotis",
                "strain": "strain=LMG 28520",
                "accession": "GCA_001685485.1",
                "taxid": 1555194,
                "species_taxid": 1555194,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6415,
                "matched_fragments": 168,
                "total_fragments": 885,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algibacter pacificus",
                "strain": "strain=H164",
                "accession": "GCA_008033385.1",
                "taxid": 2599389,
                "species_taxid": 2599389,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4401,
                "matched_fragments": 150,
                "total_fragments": 885,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aestuariivivens marinum",
                "strain": "strain=MT3-5-12",
                "accession": "GCA_022662175.1",
                "taxid": 2913555,
                "species_taxid": 2913555,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4131,
                "matched_fragments": 147,
                "total_fragments": 885,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tamlana nanhaiensis",
                "strain": "strain=FHC16",
                "accession": "GCA_000943555.1",
                "taxid": 1382798,
                "species_taxid": 1382798,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4099,
                "matched_fragments": 182,
                "total_fragments": 885,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bizionia myxarmorum",
                "strain": "strain=ADA-4",
                "accession": "GCA_008086205.1",
                "taxid": 291186,
                "species_taxid": 291186,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2825,
                "matched_fragments": 165,
                "total_fragments": 885,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Winogradskyella wandonensis",
                "strain": "strain=CECT 8445",
                "accession": "GCA_004346845.1",
                "taxid": 1442586,
                "species_taxid": 1442586,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2555,
                "matched_fragments": 138,
                "total_fragments": 885,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hyunsoonleella flava",
                "strain": "strain=T58",
                "accession": "GCA_004310325.1",
                "taxid": 2527939,
                "species_taxid": 2527939,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1873,
                "matched_fragments": 110,
                "total_fragments": 885,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tamlana sedimentorum",
                "strain": "strain=JCM 19808",
                "accession": "GCA_000943565.1",
                "taxid": 1435349,
                "species_taxid": 1435349,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0964,
                "matched_fragments": 161,
                "total_fragments": 885,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Psychroserpens luteolus",
                "strain": "strain=XSD401",
                "accession": "GCA_021032705.1",
                "taxid": 2855840,
                "species_taxid": 2855840,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8874,
                "matched_fragments": 129,
                "total_fragments": 885,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000733475.1",
                "gtdb_species": "s__Mangrovimonas yunxiaonensis",
                "ani": 100.0,
                "matched_fragments": 883,
                "total_fragments": 885,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mangrovimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.99",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003944795.1",
                "gtdb_species": "s__Mangrovimonas spongiae",
                "ani": 80.7533,
                "matched_fragments": 478,
                "total_fragments": 885,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mangrovimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002973595.1",
                "gtdb_species": "s__Jejuia pallidilutea",
                "ani": 78.5787,
                "matched_fragments": 175,
                "total_fragments": 885,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Jejuia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.03",
                "min_intra_species_ani": "97.97",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_004366715.1",
                "gtdb_species": "s__Meridianimaribacter flavus",
                "ani": 78.2923,
                "matched_fragments": 235,
                "total_fragments": 885,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Meridianimaribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.44",
                "min_intra_species_ani": "97.06",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_007997385.1",
                "gtdb_species": "s__Seonamhaeicola algicola",
                "ani": 78.2136,
                "matched_fragments": 170,
                "total_fragments": 885,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Seonamhaeicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008084905.1",
                "gtdb_species": "s__Xanthomarina maritima",
                "ani": 77.7002,
                "matched_fragments": 196,
                "total_fragments": 885,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Xanthomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000348685.1",
                "gtdb_species": "s__Xanthomarina gelatinilytica",
                "ani": 77.6715,
                "matched_fragments": 244,
                "total_fragments": 885,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Xanthomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.37",
                "min_intra_species_ani": "98.31",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001685485.1",
                "gtdb_species": "s__Formosa haliotis",
                "ani": 77.5644,
                "matched_fragments": 166,
                "total_fragments": 885,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Formosa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002893765.1",
                "gtdb_species": "s__Tamlana_A carrageenivorans",
                "ani": 77.4505,
                "matched_fragments": 143,
                "total_fragments": 885,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tamlana_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900129745.1",
                "gtdb_species": "s__Winogradskyella jejuensis",
                "ani": 77.4413,
                "matched_fragments": 110,
                "total_fragments": 885,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000943555.1",
                "gtdb_species": "s__Tamlana_B nanhaiensis",
                "ani": 77.4136,
                "matched_fragments": 183,
                "total_fragments": 885,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tamlana_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013002225.1",
                "gtdb_species": "s__Winogradskyella sp013002225",
                "ani": 77.3696,
                "matched_fragments": 84,
                "total_fragments": 885,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008086205.1",
                "gtdb_species": "s__Algorimicrobium myxarmorum",
                "ani": 77.2663,
                "matched_fragments": 166,
                "total_fragments": 885,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Algorimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004346845.1",
                "gtdb_species": "s__Winogradskyella wandonensis",
                "ani": 77.2555,
                "matched_fragments": 138,
                "total_fragments": 885,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004364975.1",
                "gtdb_species": "s__Gelidibacter sediminis",
                "ani": 77.24,
                "matched_fragments": 111,
                "total_fragments": 885,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gelidibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004310325.1",
                "gtdb_species": "s__Jejuia sp004310325",
                "ani": 77.1618,
                "matched_fragments": 111,
                "total_fragments": 885,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Jejuia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000943565.1",
                "gtdb_species": "s__Tamlana_B sedimentorum",
                "ani": 77.0931,
                "matched_fragments": 162,
                "total_fragments": 885,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tamlana_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002784145.1",
                "gtdb_species": "s__Yeosuana sp002784145",
                "ani": 76.9649,
                "matched_fragments": 122,
                "total_fragments": 885,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Yeosuana",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.75",
                "min_intra_species_ani": "99.57",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 11,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.23,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 30.25,
        "optimum_ph": 8.0,
        "genome_size": 2670033.0,
        "gc_content": 39.2,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Mangrovimonas",
        "yunxiaonensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}