{ "type": "genome", "identifier": "GCF_000734965.1", "organism": "Trabulsiella guamensis ATCC 49490", "title": "Trabulsiella guamensis ATCC 49490", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UW-GEL", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000734965.1", "bioproject": "PRJNA224116", "biosample": "SAMN02743388", "wgs_master": "JMTB00000000.1", "refseq_category": "reference genome", "taxid": "1005994", "species_taxid": "158852", "organism_name": "Trabulsiella guamensis ATCC 49490", "infraspecific_name": "strain=ATCC 49490", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/28", "asm_name": "ASM73496v1", "asm_submitter": "UW-GEL", "gbrs_paired_asm": "GCA_000734965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/734/965/GCF_000734965.1_ASM73496v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4929751", "genome_size_ungapped": "4929751", "gc_percent": "53.500000", "replicon_count": "0", "scaffold_count": "278", "contig_count": "278", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000734965.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "4892", "protein_coding_gene_count": "4621", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-28", "dateModified": "2014-07-28", "datePublished": "2014-07-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Trabulsiella guamensis ATCC 49490" ], "sample_taxid": [ "1005994" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Guam" ], "sample_host_location_id": [], "data_size": "1.406 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4929751", "Number of Sequences": "278", "Longest Sequences (bp)": "214713", "N50 (bp)": "73732", "Gap Ratio (%)": "0.000020", "GCcontent (%)": "53.6", "Number of CDSs": "4552", "Average Protein Length": "306.8", "Coding Ratio (%)": "85.0", "Number of rRNAs": "5", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Yokenella regensburgei", "strain": "strain=NCTC11966", "accession": "GCA_900460805.1", "taxid": 158877, "species_taxid": 158877, "relation_to_type": "type", "validated": true, "ani": 82.6707, "matched_fragments": 964, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yokenella regensburgei", "strain": "strain=ATCC 49455", "accession": "GCA_000735455.1", "taxid": 158877, "species_taxid": 158877, "relation_to_type": "type", "validated": true, "ani": 82.6377, "matched_fragments": 955, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. oharae", "strain": "strain=DSM 16687", "accession": "GCA_001729705.1", "taxid": 301102, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 81.794, "matched_fragments": 844, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. oharae", "strain": "strain=FDAARGOS_1533", "accession": "GCA_020097195.1", "taxid": 301102, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 81.7763, "matched_fragments": 839, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 81.6165, "matched_fragments": 797, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 81.5516, "matched_fragments": 810, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_002939185.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 81.4228, "matched_fragments": 814, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 81.4227, "matched_fragments": 828, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella quasipneumoniae subsp. similipneumoniae", "strain": "strain=07A044T", "accession": "GCA_020525685.1", "taxid": 1463164, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 81.422, "matched_fragments": 809, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella quasipneumoniae subsp. similipneumoniae", "strain": "strain=07A044", "accession": "GCA_000613225.1", "taxid": 1463164, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 81.3459, "matched_fragments": 793, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=DSM 30054", "accession": "GCA_013376815.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 81.2942, "matched_fragments": 873, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter ludwigii", "strain": "strain=EN-119", "accession": "GCA_000818595.1", "taxid": 299767, "species_taxid": 299767, "relation_to_type": "type", "validated": true, "ani": 81.2856, "matched_fragments": 830, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter ludwigii", "strain": "strain=EN-119", "accession": "GCA_001750725.1", "taxid": 299767, "species_taxid": 299767, "relation_to_type": "type", "validated": true, "ani": 81.2832, "matched_fragments": 829, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=ATCC 13047", "accession": "GCA_000755525.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 81.269, "matched_fragments": 892, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella michiganensis", "strain": "strain=DSM 25444", "accession": "GCA_002925905.1", "taxid": 1134687, "species_taxid": 1134687, "relation_to_type": "type", "validated": true, "ani": 81.2305, "matched_fragments": 840, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=DSM 30054", "accession": "GCA_021469225.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 81.2216, "matched_fragments": 886, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter ludwigii", "strain": "strain=FDAARGOS 1436", "accession": "GCA_019047005.1", "taxid": 299767, "species_taxid": 299767, "relation_to_type": "type", "validated": true, "ani": 81.2121, "matched_fragments": 832, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_021278985.1", "taxid": 67825, "species_taxid": 67825, "relation_to_type": "type", "validated": true, "ani": 81.2049, "matched_fragments": 845, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella michiganensis", "strain": "strain=CCUG 66515", "accession": "GCA_009173485.1", "taxid": 1134687, "species_taxid": 1134687, "relation_to_type": "type", "validated": true, "ani": 81.1831, "matched_fragments": 832, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella oxytoca", "strain": "strain=NCTC13727", "accession": "GCA_900636985.1", "taxid": 571, "species_taxid": 571, "relation_to_type": "type", "validated": true, "ani": 81.03, "matched_fragments": 815, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pasteurii", "strain": "", "accession": "GCA_902158725.1", "taxid": 2587529, "species_taxid": 2587529, "relation_to_type": "type", "validated": true, "ani": 80.9924, "matched_fragments": 827, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella oxytoca", "strain": "strain=DSM 5175", "accession": "GCA_020115535.1", "taxid": 571, "species_taxid": 571, "relation_to_type": "type", "validated": true, "ani": 80.9878, "matched_fragments": 812, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella oxytoca", "strain": "strain=NBRC 105695", "accession": "GCA_001598695.1", "taxid": 571, "species_taxid": 571, "relation_to_type": "type", "validated": true, "ani": 80.9649, "matched_fragments": 824, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shigella boydii", "strain": "strain=FDAARGOS_1139", "accession": "GCA_016726285.1", "taxid": 621, "species_taxid": 621, "relation_to_type": "type", "validated": true, "ani": 80.8701, "matched_fragments": 681, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shigella dysenteriae", "strain": "strain=ATCC 13313", "accession": "GCA_002949675.1", "taxid": 622, "species_taxid": 622, "relation_to_type": "suspected-type", "validated": true, "ani": 80.8364, "matched_fragments": 666, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Escherichia fergusonii", "strain": "strain=ATCC 35469T", "accession": "GCA_000026225.1", "taxid": 564, "species_taxid": 564, "relation_to_type": "type", "validated": true, "ani": 80.7625, "matched_fragments": 669, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shigella dysenteriae", "strain": "strain=NCTC4837", "accession": "GCA_900457215.1", "taxid": 622, "species_taxid": 622, "relation_to_type": "suspected-type", "validated": true, "ani": 80.7527, "matched_fragments": 679, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Escherichia fergusonii", "strain": "strain=FDAARGOS_1499", "accession": "GCA_020097475.1", "taxid": 564, "species_taxid": 564, "relation_to_type": "type", "validated": true, "ani": 80.7484, "matched_fragments": 672, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Escherichia coli", "strain": "strain=ATCC 11775", "accession": "GCA_000734955.1", "taxid": 562, "species_taxid": 562, "relation_to_type": "neotype", "validated": true, "ani": 80.6995, "matched_fragments": 734, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Escherichia coli", "strain": "strain=DSM 30083", "accession": "GCA_000690815.1", "taxid": 562, "species_taxid": 562, "relation_to_type": "neotype", "validated": true, "ani": 80.6892, "matched_fragments": 733, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Escherichia coli", "strain": "strain=ATCC 11775", "accession": "GCA_003697165.2", "taxid": 562, "species_taxid": 562, "relation_to_type": "neotype", "validated": true, "ani": 80.6196, "matched_fragments": 741, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya parazeae", "strain": "strain=S31", "accession": "GCA_017897605.1", "taxid": 2893572, "species_taxid": 2893572, "relation_to_type": "type", "validated": true, "ani": 78.3349, "matched_fragments": 307, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya zeae", "strain": "strain=NCPPB 2538", "accession": "GCA_000406165.1", "taxid": 204042, "species_taxid": 204042, 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"ani": 78.0055, "matched_fragments": 285, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000734965.1", "gtdb_species": "s__Trabulsiella guamensis", "ani": 100.0, "matched_fragments": 1535, "total_fragments": 1542, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Trabulsiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001297775.1", "gtdb_species": "s__Trabulsiella odontotermitis", "ani": 92.4787, "matched_fragments": 1290, "total_fragments": 1542, "gtdb_taxonomy": 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