{ "type": "genome", "identifier": "GCF_000735365.1", "organism": "Kluyvera ascorbata ATCC 33433", "title": "Kluyvera ascorbata ATCC 33433", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UW-GEL", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000735365.1", "bioproject": "PRJNA224116", "biosample": "SAMN02743264", "wgs_master": "JMPL00000000.1", "refseq_category": "na", "taxid": "1006000", "species_taxid": "51288", "organism_name": "Kluyvera ascorbata ATCC 33433", "infraspecific_name": "strain=ATCC 33433", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/28", "asm_name": "GKAS_DRAFTv1", "asm_submitter": "UW-GEL", "gbrs_paired_asm": "GCA_000735365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/735/365/GCF_000735365.1_GKAS_DRAFTv1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4932354", "genome_size_ungapped": "4932354", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "253", "contig_count": "253", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000735365.1-RS_2024_05_11", "annotation_date": "2024-05-11", "total_gene_count": "4788", "protein_coding_gene_count": "4541", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-28", "dateModified": "2014-07-28", "datePublished": "2014-07-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Kluyvera ascorbata ATCC 33433" ], "sample_taxid": [ "1006000" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:North Carolina" ], "sample_host_location_id": [], "data_size": "1.409 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4932354", "Number of Sequences": "253", "Longest Sequences (bp)": "144254", "N50 (bp)": "34727", "Gap Ratio (%)": "0.000122", "GCcontent (%)": "54.3", "Number of CDSs": "4513", "Average Protein Length": "307.7", "Coding Ratio (%)": "84.5", "Number of rRNAs": "2", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kluyvera ascorbata", "strain": "strain=ATCC 33433", "accession": "GCA_000735365.1", "taxid": 51288, "species_taxid": 51288, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1513, "total_fragments": 1523, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kluyvera sichuanensis", "strain": "strain=090646", "accession": "GCA_014218705.1", "taxid": 2725494, "species_taxid": 2725494, "relation_to_type": "type", "validated": true, "ani": 91.126, "matched_fragments": 1269, "total_fragments": 1523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera georgiana", "strain": "strain=ATCC 51603", "accession": "GCA_001654985.1", "taxid": 73098, "species_taxid": 73098, "relation_to_type": "type", "validated": true, "ani": 87.2413, "matched_fragments": 1159, "total_fragments": 1523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera cryocrescens", "strain": "strain=NBRC 102467", "accession": "GCA_001571285.1", "taxid": 580, "species_taxid": 580, "relation_to_type": "type", "validated": true, "ani": 85.8167, "matched_fragments": 1181, "total_fragments": 1523, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain": "strain=type strain: CPO20170097", "accession": "GCA_943590815.1", "taxid": 2488306, "species_taxid": 2488306, "relation_to_type": "type", "validated": true, "ani": 82.9021, "matched_fragments": 951, "total_fragments": 1523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 82.092, "matched_fragments": 903, "total_fragments": 1523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 81.7958, "matched_fragments": 839, "total_fragments": 1523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=PartO-Kpneumoniae-RM8376", "accession": "GCA_022869665.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 81.7743, "matched_fragments": 899, "total_fragments": 1523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella khirikhana", "strain": "strain=TH2012", "accession": "GCA_003957745.1", "taxid": 1965282, "species_taxid": 1965282, "relation_to_type": "type", "validated": true, "ani": 76.7787, "matched_fragments": 70, "total_fragments": 1523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanimonas marisflavi", "strain": "strain=102-Na3", "accession": "GCA_003049725.1", "taxid": 2059724, "species_taxid": 2059724, "relation_to_type": "type", "validated": true, "ani": 76.4066, "matched_fragments": 75, "total_fragments": 1523, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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