{
    "type": "genome",
    "identifier": "GCF_000735425.1",
    "organism": "Leminorella grimontii ATCC 33999 = DSM 5078",
    "title": "Leminorella grimontii ATCC 33999 = DSM 5078",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UW-GEL",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000735425.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02743266",
        "wgs_master": "JMPN00000000.1",
        "refseq_category": "na",
        "taxid": "1005999",
        "species_taxid": "82981",
        "organism_name": "Leminorella grimontii ATCC 33999 = DSM 5078",
        "infraspecific_name": "strain=ATCC 33999",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/07/28",
        "asm_name": "GLGR_DRAFTv1",
        "asm_submitter": "UW-GEL",
        "gbrs_paired_asm": "GCA_000735425.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/735/425/GCF_000735425.1_GLGR_DRAFTv1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4235612",
        "genome_size_ungapped": "4235612",
        "gc_percent": "54.000000",
        "replicon_count": "0",
        "scaffold_count": "57",
        "contig_count": "57",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000735425.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "3855",
        "protein_coding_gene_count": "3736",
        "non_coding_gene_count": "72",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-07-28",
    "dateModified": "2014-07-28",
    "datePublished": "2014-07-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Leminorella grimontii ATCC 33999 = DSM 5078"
        ],
        "sample_taxid": [
            "1005999"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:Hawaii"
        ],
        "sample_host_location_id": [],
        "data_size": "1.205 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.96,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4235612",
        "Number of Sequences": "57",
        "Longest Sequences (bp)": "839309",
        "N50 (bp)": "229054",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.9",
        "Number of CDSs": "3791",
        "Average Protein Length": "317.4",
        "Coding Ratio (%)": "85.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Leminorella grimontii",
                "strain": "strain=ATCC 33999",
                "accession": "GCA_000735425.1",
                "taxid": 82981,
                "species_taxid": 82981,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1389,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leminorella grimontii",
                "strain": "strain=JCM 5902",
                "accession": "GCA_024343555.1",
                "taxid": 82981,
                "species_taxid": 82981,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9991,
                "matched_fragments": 1388,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leminorella grimontii",
                "strain": "strain=DSM 5078",
                "accession": "GCA_000439085.1",
                "taxid": 82981,
                "species_taxid": 82981,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9866,
                "matched_fragments": 1380,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leminorella grimontii",
                "strain": "strain=NCTC12152",
                "accession": "GCA_900706845.1",
                "taxid": 82981,
                "species_taxid": 82981,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9826,
                "matched_fragments": 1390,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leminorella richardii",
                "strain": "strain=NCTC12151",
                "accession": "GCA_900478135.1",
                "taxid": 158841,
                "species_taxid": 158841,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.749,
                "matched_fragments": 953,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jinshanibacter zhutongyuii",
                "strain": "strain=CF-458",
                "accession": "GCA_004295645.1",
                "taxid": 2498113,
                "species_taxid": 2498113,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2066,
                "matched_fragments": 355,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia bockelmannii",
                "strain": "strain=S3",
                "accession": "GCA_008011855.1",
                "taxid": 2703793,
                "species_taxid": 2703793,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1951,
                "matched_fragments": 313,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia nevei",
                "strain": "strain=S15",
                "accession": "GCA_008364245.1",
                "taxid": 2703794,
                "species_taxid": 2703794,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1799,
                "matched_fragments": 351,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia entomophila",
                "strain": "strain=A1",
                "accession": "GCA_021462285.1",
                "taxid": 42906,
                "species_taxid": 42906,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0387,
                "matched_fragments": 329,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cronobacter sakazakii",
                "strain": "strain=ATCC 29544",
                "accession": "GCA_001971035.1",
                "taxid": 28141,
                "species_taxid": 28141,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5665,
                "matched_fragments": 240,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 98.96,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000439085.1",
                "gtdb_species": "s__Leminorella grimontii",
                "ani": 99.9866,
                "matched_fragments": 1380,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Leminorella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900478135.1",
                "gtdb_species": "s__Leminorella richardii",
                "ani": 82.7386,
                "matched_fragments": 954,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Leminorella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016649425.1",
                "gtdb_species": "s__Limnobaculum allomyrinae",
                "ani": 78.432,
                "matched_fragments": 327,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Limnobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013394855.1",
                "gtdb_species": "s__Limnobaculum xujianqingii",
                "ani": 78.3886,
                "matched_fragments": 333,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Limnobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "97.65",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_003096015.2",
                "gtdb_species": "s__Limnobaculum parvum",
                "ani": 78.3405,
                "matched_fragments": 306,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Limnobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000513215.1",
                "gtdb_species": "s__Serratia bockelmannii",
                "ani": 78.2951,
                "matched_fragments": 316,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 96.0065,
                "mean_intra_species_ani": "98.98",
                "min_intra_species_ani": "98.60",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 42,
                "status": "-"
            },
            {
                "accession": "GCF_900187015.1",
                "gtdb_species": "s__Serratia ficaria",
                "ani": 78.2867,
                "matched_fragments": 357,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.70",
                "min_intra_species_ani": "99.56",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_001902635.1",
                "gtdb_species": "s__Serratia marcescens_F",
                "ani": 78.2035,
                "matched_fragments": 317,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004295645.1",
                "gtdb_species": "s__Limnobaculum zhutongyuii",
                "ani": 78.1925,
                "matched_fragments": 357,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Limnobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016742975.1",
                "gtdb_species": "s__Serratia nevei",
                "ani": 78.185,
                "matched_fragments": 320,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 96.1913,
                "mean_intra_species_ani": "97.82",
                "min_intra_species_ani": "96.26",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 139,
                "status": "-"
            },
            {
                "accession": "GCF_006715005.1",
                "gtdb_species": "s__Serratia marcescens_J",
                "ani": 78.1201,
                "matched_fragments": 329,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 96.1913,
                "mean_intra_species_ani": "98.92",
                "min_intra_species_ani": "98.92",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002220655.1",
                "gtdb_species": "s__Serratia marcescens_K",
                "ani": 78.1099,
                "matched_fragments": 358,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 96.0833,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "98.10",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 411,
                "status": "-"
            },
            {
                "accession": "GCF_001642805.2",
                "gtdb_species": "s__Serratia surfactantfaciens",
                "ani": 78.1015,
                "matched_fragments": 337,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.81",
                "min_intra_species_ani": "97.95",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_001598855.1",
                "gtdb_species": "s__Pluralibacter gergoviae",
                "ani": 78.0665,
                "matched_fragments": 321,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pluralibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.81",
                "min_intra_species_ani": "98.03",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 23,
                "status": "-"
            },
            {
                "accession": "GCF_013375155.1",
                "gtdb_species": "s__Serratia ureilytica",
                "ani": 78.0376,
                "matched_fragments": 341,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.3985,
                "mean_intra_species_ani": "98.73",
                "min_intra_species_ani": "97.62",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 142,
                "status": "-"
            },
            {
                "accession": "GCF_900112475.1",
                "gtdb_species": "s__Pragia fontium",
                "ani": 78.0147,
                "matched_fragments": 335,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pragia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.20",
                "min_intra_species_ani": "98.63",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_009800925.1",
                "gtdb_species": "s__Budvicia diplopodorum",
                "ani": 77.8301,
                "matched_fragments": 296,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Budvicia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004342285.1",
                "gtdb_species": "s__Klebsiella sp004342285",
                "ani": 77.7758,
                "matched_fragments": 254,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000427805.1",
                "gtdb_species": "s__Budvicia aquatica",
                "ani": 77.5646,
                "matched_fragments": 284,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Budvicia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.91",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003612015.1",
                "gtdb_species": "s__Pantoea piersonii",
                "ani": 77.4891,
                "matched_fragments": 259,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pantoea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.15",
                "min_intra_species_ani": "96.25",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 11,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 36.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 4228833.0,
        "gc_content": 51.9,
        "coding_genes": 3392.0,
        "rRNA16S_genes": null,
        "tRNA_genes": 68.0,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Leminorella",
        "grimontii",
        "ATCC",
        "33999",
        "=",
        "DSM",
        "5078"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}