{
    "type": "genome",
    "identifier": "GCF_000735435.1",
    "organism": "Raoultella planticola ATCC 33531",
    "title": "Raoultella planticola ATCC 33531",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UW-GEL",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000735435.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02743268",
        "wgs_master": "JMPP00000000.1",
        "refseq_category": "na",
        "taxid": "1005996",
        "species_taxid": "575",
        "organism_name": "Raoultella planticola ATCC 33531",
        "infraspecific_name": "strain=ATCC 33531",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/07/28",
        "asm_name": "GRPL_DRAFTv1",
        "asm_submitter": "UW-GEL",
        "gbrs_paired_asm": "GCA_000735435.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/735/435/GCF_000735435.1_GRPL_DRAFTv1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5668028",
        "genome_size_ungapped": "5668028",
        "gc_percent": "56.000000",
        "replicon_count": "0",
        "scaffold_count": "83",
        "contig_count": "83",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000735435.1-RS_2024_07_01",
        "annotation_date": "2024-07-01",
        "total_gene_count": "5385",
        "protein_coding_gene_count": "5189",
        "non_coding_gene_count": "82",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-07-28",
    "dateModified": "2014-07-28",
    "datePublished": "2014-07-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Raoultella planticola ATCC 33531"
        ],
        "sample_taxid": [
            "1005996"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "unknown"
        ],
        "sample_host_location_id": [],
        "data_size": "1.609 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.96,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5668028",
        "Number of Sequences": "83",
        "Longest Sequences (bp)": "444911",
        "N50 (bp)": "119720",
        "Gap Ratio (%)": "0.000018",
        "GCcontent (%)": "55.8",
        "Number of CDSs": "5226",
        "Average Protein Length": "315.4",
        "Coding Ratio (%)": "87.2",
        "Number of rRNAs": "5",
        "Number of tRNAs": "68",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Raoultella planticola",
                "strain": "strain=ATCC 33531",
                "accession": "GCA_000735435.1",
                "taxid": 575,
                "species_taxid": 575,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1848,
                "total_fragments": 1852,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Raoultella ornithinolytica",
                "strain": "strain=NBRC 105727",
                "accession": "GCA_001598295.1",
                "taxid": 54291,
                "species_taxid": 54291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.7062,
                "matched_fragments": 1618,
                "total_fragments": 1852,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Raoultella electrica",
                "strain": "strain=DSM 102253",
                "accession": "GCA_006711645.1",
                "taxid": 1259973,
                "species_taxid": 1259973,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.5628,
                "matched_fragments": 1453,
                "total_fragments": 1852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Raoultella terrigena",
                "strain": "strain=NBRC 14941",
                "accession": "GCA_006539725.1",
                "taxid": 577,
                "species_taxid": 577,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.98,
                "matched_fragments": 1373,
                "total_fragments": 1852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klebsiella grimontii",
                "strain": "strain=06D021",
                "accession": "GCA_900200035.1",
                "taxid": 2058152,
                "species_taxid": 2058152,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.724,
                "matched_fragments": 1322,
                "total_fragments": 1852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klebsiella michiganensis",
                "strain": "strain=DSM 25444",
                "accession": "GCA_002925905.1",
                "taxid": 1134687,
                "species_taxid": 1134687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.7053,
                "matched_fragments": 1344,
                "total_fragments": 1852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klebsiella oxytoca",
                "strain": "strain=DSM 5175",
                "accession": "GCA_020115535.1",
                "taxid": 571,
                "species_taxid": 571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3528,
                "matched_fragments": 1270,
                "total_fragments": 1852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klebsiella oxytoca",
                "strain": "strain=NBRC 105695",
                "accession": "GCA_001598695.1",
                "taxid": 571,
                "species_taxid": 571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3194,
                "matched_fragments": 1275,
                "total_fragments": 1852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klebsiella pneumoniae",
                "strain": "strain=PartO-Kpneumoniae-RM8376",
                "accession": "GCA_022869665.1",
                "taxid": 573,
                "species_taxid": 573,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.9344,
                "matched_fragments": 1236,
                "total_fragments": 1852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klebsiella pneumoniae",
                "strain": "strain=ATCC 13883",
                "accession": "GCA_000742135.1",
                "taxid": 573,
                "species_taxid": 573,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8971,
                "matched_fragments": 1236,
                "total_fragments": 1852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klebsiella pneumoniae subsp. pneumoniae",
                "strain": "strain=ATCC 13883",
                "accession": "GCA_000788015.1",
                "taxid": 72407,
                "species_taxid": 573,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7954,
                "matched_fragments": 1281,
                "total_fragments": 1852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter roggenkampii",
                "strain": "strain=DSM 16690",
                "accession": "GCA_024390995.1",
                "taxid": 1812935,
                "species_taxid": 1812935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6864,
                "matched_fragments": 885,
                "total_fragments": 1852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter wuhouensis",
                "strain": "strain=WCHEW120002",
                "accession": "GCA_004331265.1",
                "taxid": 2529381,
                "species_taxid": 2529381,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.644,
                "matched_fragments": 907,
                "total_fragments": 1852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudocitrobacter corydidari",
                "strain": "",
                "accession": "GCA_021172065.1",
                "taxid": 2891570,
                "species_taxid": 2891570,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5598,
                "matched_fragments": 922,
                "total_fragments": 1852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Citrobacter rodentium",
                "strain": "strain=DSM 16636",
                "accession": "GCA_021278985.1",
                "taxid": 67825,
                "species_taxid": 67825,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2773,
                "matched_fragments": 878,
                "total_fragments": 1852,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 98.96,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000735435.1",
                "gtdb_species": "s__Klebsiella planticola",
                "ani": 100.0,
                "matched_fragments": 1848,
                "total_fragments": 1852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
                "ani_circumscription_radius": 95.7194,
                "mean_intra_species_ani": "99.21",
                "min_intra_species_ani": "98.49",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 44,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001598295.1",
                "gtdb_species": "s__Klebsiella ornithinolytica",
                "ani": 95.7062,
                "matched_fragments": 1618,
                "total_fragments": 1852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
                "ani_circumscription_radius": 95.7194,
                "mean_intra_species_ani": "99.42",
                "min_intra_species_ani": "99.16",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 95,
                "status": "-"
            },
            {
                "accession": "GCA_900759445.1",
                "gtdb_species": "s__Klebsiella sp900759445",
                "ani": 94.7162,
                "matched_fragments": 815,
                "total_fragments": 1852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006711645.1",
                "gtdb_species": "s__Klebsiella electrica",
                "ani": 93.5631,
                "matched_fragments": 1453,
                "total_fragments": 1852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.88",
                "min_intra_species_ani": "98.54",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_004342285.1",
                "gtdb_species": "s__Klebsiella sp004342285",
                "ani": 88.9844,
                "matched_fragments": 1444,
                "total_fragments": 1852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014298075.1",
                "gtdb_species": "s__Klebsiella sp003752615",
                "ani": 87.3634,
                "matched_fragments": 1407,
                "total_fragments": 1852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.02",
                "min_intra_species_ani": "98.38",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_002270295.1",
                "gtdb_species": "s__Klebsiella sp002270295",
                "ani": 86.1049,
                "matched_fragments": 1434,
                "total_fragments": 1852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_011754535.1",
                "gtdb_species": "s__Enterobacter cloacae_N",
                "ani": 81.4656,
                "matched_fragments": 931,
                "total_fragments": 1852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.03",
                "min_intra_species_ani": "98.99",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 33.5,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 5659896.286,
        "gc_content": 55.524,
        "coding_genes": 5058.5,
        "rRNA16S_genes": 8.0,
        "tRNA_genes": 84.5,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Raoultella",
        "planticola",
        "ATCC",
        "33531"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}