{ "type": "genome", "identifier": "GCF_000735515.1", "organism": "Leclercia adecarboxylata ATCC 23216 = NBRC 102595", "title": "Leclercia adecarboxylata ATCC 23216 = NBRC 102595", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UW-GEL (University of Wisconsin - Genome Evolution Laboratory)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000735515.1", "bioproject": "PRJNA224116", "biosample": "SAMN02743265", "wgs_master": "JMPM00000000.1", "refseq_category": "na", "taxid": "911008", "species_taxid": "83655", "organism_name": "Leclercia adecarboxylata ATCC 23216 = NBRC 102595", "infraspecific_name": "strain=ATCC 23216", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/28", "asm_name": "GLAD_DRAFTv1", "asm_submitter": "UW-GEL (University of Wisconsin - Genome Evolution Laboratory)", "gbrs_paired_asm": "GCA_000735515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/735/515/GCF_000735515.1_GLAD_DRAFTv1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4991160", "genome_size_ungapped": "4991160", "gc_percent": "55.500000", "replicon_count": "0", "scaffold_count": "169", "contig_count": "169", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000735515.1-RS_2024_05_11", "annotation_date": "2024-05-11", "total_gene_count": "4836", "protein_coding_gene_count": "4611", "non_coding_gene_count": "85", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-28", "dateModified": "2014-07-28", "datePublished": "2014-07-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Leclercia adecarboxylata ATCC 23216 = NBRC 102595" ], "sample_taxid": [ "911008" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "unknown" ], "sample_host_location_id": [], "data_size": "1.425 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4991160", "Number of Sequences": "169", "Longest Sequences (bp)": "264372", "N50 (bp)": "85256", "Gap Ratio (%)": "0.000060", "GCcontent (%)": "55.6", "Number of CDSs": "4644", "Average Protein Length": "310.7", "Coding Ratio (%)": "86.7", "Number of rRNAs": "4", "Number of tRNAs": "67", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leclercia adecarboxylata", "strain": "strain=ATCC 23216", "accession": "GCA_000735515.1", "taxid": 83655, "species_taxid": 83655, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1592, "total_fragments": 1597, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leclercia adecarboxylata", "strain": "strain=FDAARGOS_1505", "accession": "GCA_020097395.1", "taxid": 83655, "species_taxid": 83655, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9959, "matched_fragments": 1596, "total_fragments": 1597, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leclercia adecarboxylata", "strain": "strain=NBRC 102595", "accession": "GCA_001515505.1", "taxid": 83655, "species_taxid": 83655, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9901, "matched_fragments": 1581, "total_fragments": 1597, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 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"matched_fragments": 1120, "total_fragments": 1597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 84.1492, "matched_fragments": 1084, "total_fragments": 1597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leclercia pneumoniae", "strain": "strain=49125", "accession": "GCA_018987305.1", "taxid": 2815358, "species_taxid": 2815358, "relation_to_type": "type", "validated": true, "ani": 84.147, "matched_fragments": 1124, "total_fragments": 1597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=DSM 30054", "accession": "GCA_021469225.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 84.0837, "matched_fragments": 1078, "total_fragments": 1597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cancerogenus", "strain": "strain=FDAARGOS 1428", "accession": "GCA_019047785.1", "taxid": 69218, "species_taxid": 69218, "relation_to_type": "type", "validated": true, "ani": 84.0057, "matched_fragments": 1052, "total_fragments": 1597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_002939185.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 83.9953, "matched_fragments": 1027, "total_fragments": 1597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cancerogenus", "strain": "", "accession": "GCA_900185905.1", "taxid": 69218, "species_taxid": 69218, "relation_to_type": "type", "validated": true, "ani": 83.9503, "matched_fragments": 1063, "total_fragments": 1597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter kobei", "strain": "strain=DSM 13645", "accession": "GCA_001729765.1", "taxid": 208224, "species_taxid": 208224, "relation_to_type": "type", "validated": true, "ani": 83.9428, "matched_fragments": 1045, "total_fragments": 1597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 83.9333, "matched_fragments": 1056, "total_fragments": 1597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella khirikhana", "strain": "strain=TH2012", "accession": "GCA_003957745.1", "taxid": 1965282, "species_taxid": 1965282, "relation_to_type": "type", "validated": true, "ani": 77.0104, "matched_fragments": 75, "total_fragments": 1597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanimonas marisflavi", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Leclercia", "adecarboxylata", "ATCC", "23216", "=", "NBRC", "102595" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }