{ "type": "genome", "identifier": "GCF_000737065.1", "organism": "Thioclava atlantica", "title": "Thioclava atlantica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of State Oceanic Administration (SOA)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000737065.1", "bioproject": "PRJNA224116", "biosample": "SAMN02945012", "wgs_master": "AQRC00000000.1", "refseq_category": "reference genome", "taxid": "1317124", "species_taxid": "1317124", "organism_name": "Thioclava atlantica", "infraspecific_name": "strain=13D2W-2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/07/31", "asm_name": "ASM73706v1", "asm_submitter": "The Third Institute of State Oceanic Administration (SOA)", "gbrs_paired_asm": "GCA_000737065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/737/065/GCF_000737065.1_ASM73706v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3928443", "genome_size_ungapped": "3928443", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000737065.1-RS_2024_03_21", "annotation_date": "2024-03-21", "total_gene_count": "3835", "protein_coding_gene_count": "3744", "non_coding_gene_count": "52", "pubmed_id": "25361528" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-07-31", "dateModified": "2014-07-31", "datePublished": "2014-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Thioclava atlantica" ], "sample_taxid": [ "1317124" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Atlantic Ocean" ], "sample_host_location_id": [], "data_size": "1.079 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3928443", "Number of Sequences": "47", "Longest Sequences (bp)": "531809", "N50 (bp)": "235161", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.3", "Number of CDSs": "3774", "Average Protein Length": "311.6", "Coding Ratio (%)": "89.8", "Number of rRNAs": "2", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thioclava atlantica", "strain": "strain=13D2W-2", "accession": "GCA_000737065.1", "taxid": 1317124, "species_taxid": 1317124, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Thioclava", "atlantica" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }