{ "type": "genome", "identifier": "GCF_000737695.1", "organism": "Flavobacterium hydatis", "title": "Flavobacterium hydatis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GCAT-SEEK", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000737695.1", "bioproject": "PRJNA224116", "biosample": "SAMN02934144", "wgs_master": "JPRM00000000.1", "refseq_category": "na", "taxid": "991", "species_taxid": "991", "organism_name": "Flavobacterium hydatis", "infraspecific_name": "strain=DSM 2063", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/08/05", "asm_name": "ASM73769v1", "asm_submitter": "GCAT-SEEK", "gbrs_paired_asm": "GCA_000737695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/737/695/GCF_000737695.1_ASM73769v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5877671", "genome_size_ungapped": "5877671", "gc_percent": "32.500000", "replicon_count": "0", "scaffold_count": "99", "contig_count": "99", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000737695.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5090", "protein_coding_gene_count": "4978", "non_coding_gene_count": "85", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-08-05", "dateModified": "2014-08-05", "datePublished": "2014-08-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium hydatis" ], "sample_taxid": [ "991" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Michigan" ], "sample_host_location_id": [], "data_size": "1.640 MB", 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hydatis", "strain": "strain=ATCC 29551", "accession": "GCA_002217335.1", "taxid": 991, "species_taxid": 991, "relation_to_type": "type", "validated": true, "ani": 99.9668, "matched_fragments": 1884, "total_fragments": 1919, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_902804475.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 81.1291, "matched_fragments": 885, "total_fragments": 1919, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_904425415.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 81.107, "matched_fragments": 908, "total_fragments": 1919, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium araucananum", "strain": "strain=DSM 24704", "accession": "GCA_002222055.1", "taxid": 946678, "species_taxid": 946678, "relation_to_type": "type", "validated": true, "ani": 80.9033, "matched_fragments": 852, "total_fragments": 1919, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=DSM 12611", "accession": "GCA_000832125.1", "taxid": 37752, "species_taxid": 37752, "relation_to_type": "type", "validated": true, "ani": 80.8113, "matched_fragments": 885, "total_fragments": 1919, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=ATCC 51468", "accession": "GCA_002217315.1", "taxid": 37752, "species_taxid": 37752, "relation_to_type": "type", "validated": true, "ani": 80.7847, "matched_fragments": 889, "total_fragments": 1919, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=NCTC13514", "accession": "GCA_900450525.1", "taxid": 37752, "species_taxid": 37752, "relation_to_type": "type", "validated": true, "ani": 80.7358, "matched_fragments": 880, "total_fragments": 1919, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychroterrae", "strain": "strain=CCM 8827", "accession": "GCA_018380615.1", "taxid": 2133767, "species_taxid": 2133767, "relation_to_type": "type", "validated": true, "ani": 80.7056, "matched_fragments": 851, "total_fragments": 1919, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscis", "strain": "strain=CCUG 60099", "accession": "GCA_002222045.1", "taxid": 1114874, "species_taxid": 1114874, "relation_to_type": "type", "validated": true, "ani": 80.6147, "matched_fragments": 828, "total_fragments": 1919, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscis", "strain": "strain=CCUG 60099", "accession": "GCA_001686925.1", "taxid": 1114874, "species_taxid": 1114874, "relation_to_type": "type", 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1919, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium foetidum", "strain": "strain=JCM 32085", "accession": "GCA_004634245.1", "taxid": 2026681, "species_taxid": 2026681, "relation_to_type": "type", "validated": true, "ani": 79.1031, "matched_fragments": 618, "total_fragments": 1919, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oreochromis", "strain": "strain=Costa Rica 04-02-TN", "accession": "GCA_019565455.1", "taxid": 2906078, "species_taxid": 2906078, "relation_to_type": "type", "validated": true, "ani": 76.9588, "matched_fragments": 166, "total_fragments": 1919, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000737695.1", "gtdb_species": "s__Flavobacterium hydatis", "ani": 100.0, "matched_fragments": 1915, "total_fragments": 1919, "gtdb_taxonomy": 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