{ "type": "genome", "identifier": "GCF_000737705.1", "organism": "Chryseobacterium soli", "title": "Chryseobacterium soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GCAT-SEEK", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000737705.1", "bioproject": "PRJNA224116", "biosample": "SAMN02934080", "wgs_master": "JPRH00000000.1", "refseq_category": "reference genome", "taxid": "445961", "species_taxid": "445961", "organism_name": "Chryseobacterium soli", "infraspecific_name": "strain=DSM 19298", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/08/05", "asm_name": "ASM73770v1", "asm_submitter": "GCAT-SEEK", "gbrs_paired_asm": "GCA_000737705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/737/705/GCF_000737705.1_ASM73770v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4754478", "genome_size_ungapped": "4754478", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000737705.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4413", "protein_coding_gene_count": "4318", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-08-05", "dateModified": "2014-08-05", "datePublished": "2014-08-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium soli" ], "sample_taxid": [ "445961" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.335 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4754478", "Number of Sequences": "26", "Longest Sequences (bp)": "1151102", "N50 (bp)": "612937", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.4", "Number of CDSs": "4292", "Average Protein Length": "320.2", "Coding Ratio (%)": "86.7", "Number of rRNAs": "6", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium soli", "strain": "strain=DSM 19298", "accession": "GCA_000737705.1", "taxid": 445961, "species_taxid": 445961, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1566, "total_fragments": 1569, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium limigenitum", "strain": "strain=SUR2", "accession": "GCA_900114875.1", "taxid": 1612149, "species_taxid": 1612149, "relation_to_type": "type", "validated": true, "ani": 81.4947, "matched_fragments": 835, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium glaciei", "strain": "strain=IHBB 10212", "accession": "GCA_001648155.1", "taxid": 1685010, "species_taxid": 1685010, "relation_to_type": "type", "validated": true, "ani": 81.374, "matched_fragments": 889, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium antibioticum", "strain": "strain=RP-3-3", "accession": "GCA_012927325.1", "taxid": 2728847, "species_taxid": 2728847, "relation_to_type": "type", "validated": true, "ani": 81.132, "matched_fragments": 874, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium shigense", "strain": "strain=DSM 17126", "accession": "GCA_900156575.1", "taxid": 297244, "species_taxid": 297244, "relation_to_type": "type", "validated": true, "ani": 81.1049, "matched_fragments": 876, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium shigense", "strain": "strain=DSM 17126", "accession": "GCA_002943655.1", "taxid": 297244, "species_taxid": 297244, "relation_to_type": "type", "validated": true, "ani": 81.0752, "matched_fragments": 874, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium polytrichastri", "strain": "strain=DSM 26899", "accession": "GCA_900142445.1", "taxid": 1302687, "species_taxid": 1302687, "relation_to_type": "type", "validated": true, "ani": 81.0053, "matched_fragments": 916, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 80.6507, "matched_fragments": 808, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium angstadtii", "strain": "strain=KM", "accession": "GCA_001045465.1", "taxid": 558151, "species_taxid": 558151, "relation_to_type": "type", "validated": true, "ani": 80.6063, "matched_fragments": 861, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizosphaerae", "strain": "strain=KCTC 22548", "accession": "GCA_003385455.1", "taxid": 395937, "species_taxid": 395937, "relation_to_type": "type", "validated": true, "ani": 80.5919, "matched_fragments": 828, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium candidae", "strain": "strain=JC507", "accession": "GCA_004916905.1", "taxid": 1978493, "species_taxid": 1978493, "relation_to_type": "type", "validated": true, "ani": 80.5799, "matched_fragments": 798, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium cucumeris", "strain": "strain=GSE06", "accession": "GCA_001593385.1", "taxid": 1813611, "species_taxid": 1813611, "relation_to_type": "type", "validated": true, "ani": 80.5743, "matched_fragments": 854, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizosphaerae", "strain": "strain=NBRC 105248", "accession": "GCA_007991415.1", "taxid": 395937, "species_taxid": 395937, "relation_to_type": "type", "validated": true, "ani": 80.5588, "matched_fragments": 828, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizoplanae", "strain": "strain=DSM 29371", "accession": "GCA_900182655.1", "taxid": 1609531, "species_taxid": 1609531, "relation_to_type": "type", "validated": true, "ani": 80.5165, "matched_fragments": 866, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oncorhynchi", "strain": "strain=701B-08", "accession": "GCA_002899895.2", "taxid": 741074, "species_taxid": 741074, "relation_to_type": "type", "validated": true, "ani": 80.4718, "matched_fragments": 814, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 80.4438, "matched_fragments": 663, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium piperi", "strain": "strain=CTM", "accession": "GCA_000737775.1", "taxid": 558152, "species_taxid": 558152, "relation_to_type": "type", "validated": true, "ani": 80.4166, "matched_fragments": 701, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium piperi", "strain": "strain=ATCC BAA-1782", "accession": "GCA_002285635.2", "taxid": 558152, "species_taxid": 558152, "relation_to_type": "type", "validated": true, "ani": 80.3791, "matched_fragments": 727, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 79.467, "matched_fragments": 631, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000737705.1", "gtdb_species": "s__Chryseobacterium soli", "ani": 100.0, "matched_fragments": 1566, 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