{ "type": "genome", "identifier": "GCF_000738675.1", "organism": "Serratia nematodiphila DZ0503SBS1", "title": "Serratia nematodiphila DZ0503SBS1", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyungpook National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000738675.1", "bioproject": "PRJNA224116", "biosample": "SAMN02952129", "wgs_master": "JPUX00000000.1", "refseq_category": "na", "taxid": "1449981", "species_taxid": "458197", "organism_name": "Serratia nematodiphila DZ0503SBS1", "infraspecific_name": "strain=DSM 21420", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/08/07", "asm_name": "ASM73867v1", "asm_submitter": "Kyungpook National University", "gbrs_paired_asm": "GCA_000738675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/738/675/GCF_000738675.1_ASM73867v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5224920", "genome_size_ungapped": "5224920", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000738675.1-RS_2024_06_16", "annotation_date": "2024-06-16", "total_gene_count": "4984", "protein_coding_gene_count": "4800", "non_coding_gene_count": "128", "pubmed_id": "25444874" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-08-07", "dateModified": "2014-08-07", "datePublished": "2014-08-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Serratia nematodiphila DZ0503SBS1" ], "sample_taxid": [ "1449981" ], "sample_host_organism": [ "Oscheius chongmingensis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.458 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.44, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5224920", "Number of Sequences": "2", "Longest Sequences (bp)": "4451630", "N50 (bp)": "4451630", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.5", "Number of CDSs": "4884", "Average Protein Length": "311.6", "Coding Ratio (%)": "87.4", "Number of rRNAs": "23", "Number of tRNAs": "93", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Serratia nematodiphila", "strain": "strain=DSM 21420", "accession": "GCA_000738675.1", "taxid": 458197, "species_taxid": 458197, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1740, "total_fragments": 1740, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Serratia nematodiphila", "strain": "strain=CGMCC 1.6853", "accession": "GCA_900101535.1", "taxid": 458197, "species_taxid": 458197, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9869, "matched_fragments": 1707, "total_fragments": 1740, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Serratia marcescens", "strain": "strain=ATCC 13880", "accession": "GCA_017654245.1", "taxid": 615, "species_taxid": 615, "relation_to_type": "suspected-type", "validated": true, "ani": 96.8521, "matched_fragments": 1576, "total_fragments": 1740, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Serratia marcescens", "strain": "strain=ATCC 13880 substr. 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Sm_S65_jyu2015", "accession": "GCA_017298975.1", "taxid": 615, "species_taxid": 615, "relation_to_type": "suspected-type", "validated": true, "ani": 96.8077, "matched_fragments": 1576, "total_fragments": 1740, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Serratia ureilytica", "strain": "strain=CCUG:50595", "accession": "GCA_013375155.1", "taxid": 300181, "species_taxid": 300181, "relation_to_type": "type", "validated": true, "ani": 95.2598, "matched_fragments": 1523, "total_fragments": 1740, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Serratia bockelmannii", "strain": "strain=S3", "accession": "GCA_008011855.1", "taxid": 2703793, "species_taxid": 2703793, "relation_to_type": "type", "validated": true, "ani": 95.2235, "matched_fragments": 1509, "total_fragments": 1740, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Serratia nevei", "strain": "strain=S15", "accession": "GCA_008364245.1", "taxid": 2703794, 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