{ "type": "genome", "identifier": "GCF_000738775.1", "organism": "Prescottella defluvii", "title": "Prescottella defluvii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Northumbria University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000738775.1", "bioproject": "PRJNA224116", "biosample": "SAMN02910065", "wgs_master": "JPOC00000000.1", "refseq_category": "reference genome", "taxid": "1323361", "species_taxid": "1323361", "organism_name": "Prescottella defluvii", "infraspecific_name": "strain=Ca11", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/08/08", "asm_name": "ASM73877v1", "asm_submitter": "Northumbria University", "gbrs_paired_asm": "GCA_000738775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/738/775/GCF_000738775.1_ASM73877v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5134337", "genome_size_ungapped": "5134337", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "267", "contig_count": "267", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000738775.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4884", "protein_coding_gene_count": "4687", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-08-08", "dateModified": "2014-08-08", "datePublished": "2014-08-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Prescottella defluvii" ], "sample_taxid": [ "1323361" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Aachen" ], "sample_host_location_id": [], "data_size": "1.396 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 2.08, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5134337", "Number of Sequences": "267", "Longest Sequences (bp)": "236997", "N50 (bp)": "113001", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.7", "Number of CDSs": "4647", "Average Protein Length": "327.1", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prescottella defluvii", "strain": "strain=Ca11", "accession": "GCA_000738775.1", "taxid": 1323361, "species_taxid": 1323361, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1636, "total_fragments": 1642, "ani_threshold": 95, 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"genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Prescottella", "defluvii" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }